Strain Fitness in Escherichia coli ECRC98 around JDDGAC_14270

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntftsI and JDDGAC_14265 are separated by 15 nucleotidesJDDGAC_14265 and rsmH overlap by 4 nucleotidesrsmH and mraZ are separated by 1 nucleotides JDDGAC_14260: ftsI - peptidoglycan glycosyltransferase FtsI, at 2,648,205 to 2,649,971 ftsI JDDGAC_14265: JDDGAC_14265 - penicillin-binding protein PBP3 FtsI, at 2,649,987 to 2,650,352 _14265 JDDGAC_14270: rsmH - 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH, at 2,650,349 to 2,651,290 rsmH JDDGAC_14275: mraZ - division/cell wall cluster transcriptional repressor MraZ, at 2,651,292 to 2,651,750 mraZ Position (kb) 2650 2651 2652Strain fitness (log2 ratio) -2 -1 0 1at 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmHat 2650.635 kb on - strand, within rsmHat 2651.524 kb on - strand, within mraZat 2651.899 kb on - strandat 2651.934 kb on - strandat 2651.940 kb on - strandat 2651.940 kb on - strandat 2652.000 kb on + strandat 2652.000 kb on + strandat 2652.000 kb on + strandat 2652.000 kb on + strandat 2652.002 kb on + strandat 2652.002 kb on + strandat 2652.003 kb on - strandat 2652.035 kb on - strandat 2652.035 kb on - strandat 2652.041 kb on + strandat 2652.041 kb on + strandat 2652.041 kb on + strandat 2652.041 kb on + strandat 2652.042 kb on - strandat 2652.042 kb on - strandat 2652.042 kb on - strandat 2652.042 kb on - strandat 2652.152 kb on - strandat 2652.160 kb on - strandat 2652.189 kb on - strandat 2652.192 kb on + strandat 2652.193 kb on - strandat 2652.193 kb on - strandat 2652.217 kb on - strandat 2652.217 kb on - strandat 2652.221 kb on - strandat 2652.249 kb on + strandat 2652.250 kb on - strandat 2652.253 kb on - strandat 2652.278 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,650,635 - rsmH JDDGAC_14270 0.30 -0.3
2,650,635 - rsmH JDDGAC_14270 0.30 -0.9
2,650,635 - rsmH JDDGAC_14270 0.30 +0.6
2,651,524 - mraZ JDDGAC_14275 0.51 -0.5
2,651,899 - +0.9
2,651,934 - +0.2
2,651,940 - +0.2
2,651,940 - -0.8
2,652,000 + +0.4
2,652,000 + +0.4
2,652,000 + -0.4
2,652,000 + +0.1
2,652,002 + -0.7
2,652,002 + +0.7
2,652,003 - +0.4
2,652,035 - +0.6
2,652,035 - +0.1
2,652,041 + -0.9
2,652,041 + +1.1
2,652,041 + +0.4
2,652,041 + -0.2
2,652,042 - +1.1
2,652,042 - -1.3
2,652,042 - +0.2
2,652,042 - -2.6
2,652,152 - -0.4
2,652,160 - -0.4
2,652,189 - -0.6
2,652,192 + -0.6
2,652,193 - +0.4
2,652,193 - +0.4
2,652,217 - +0.4
2,652,217 - -1.8
2,652,221 - +1.4
2,652,249 + +0.1
2,652,250 - -0.9
2,652,253 - +0.5
2,652,278 - -0.6

Or see this region's nucleotide sequence