Strain Fitness in Escherichia coli ECRC98 around JDDGAC_03820

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntddpB and ddpC overlap by 4 nucleotidesddpC and dppD overlap by 4 nucleotidesdppD and ddpF overlap by 8 nucleotides JDDGAC_03815: ddpB - putative D,D-dipeptide transport system permease protein DdpB, at 657,025 to 658,047 ddpB JDDGAC_03820: ddpC - D,D-dipeptide ABC transporter permease, at 658,044 to 658,940 ddpC JDDGAC_03825: dppD - ABC transporter ATP-binding protein, at 658,937 to 659,923 dppD JDDGAC_03830: ddpF - putative D,D-dipeptide transport ATP-binding protein DdpF, at 659,916 to 660,842 ddpF Position (kb) 658 659Strain fitness (log2 ratio) -2 -1 0 1 2at 657.097 kb on - strandat 657.169 kb on - strand, within ddpBat 657.215 kb on - strand, within ddpBat 657.219 kb on - strand, within ddpBat 657.306 kb on + strand, within ddpBat 657.431 kb on + strand, within ddpBat 657.512 kb on + strand, within ddpBat 657.727 kb on + strand, within ddpBat 657.776 kb on + strand, within ddpBat 657.776 kb on + strand, within ddpBat 657.777 kb on - strand, within ddpBat 657.777 kb on - strand, within ddpBat 657.777 kb on - strand, within ddpBat 657.914 kb on + strand, within ddpBat 657.914 kb on + strand, within ddpBat 658.003 kb on + strandat 658.072 kb on + strandat 658.165 kb on + strand, within ddpCat 658.168 kb on + strand, within ddpCat 658.471 kb on + strand, within ddpCat 658.529 kb on + strand, within ddpCat 658.554 kb on + strand, within ddpCat 658.583 kb on - strand, within ddpCat 658.598 kb on + strand, within ddpCat 658.598 kb on + strand, within ddpCat 658.599 kb on - strand, within ddpCat 658.602 kb on + strand, within ddpCat 658.603 kb on - strand, within ddpCat 658.658 kb on + strand, within ddpCat 658.658 kb on + strand, within ddpCat 658.723 kb on + strand, within ddpCat 658.809 kb on + strand, within ddpCat 658.877 kb on + strandat 659.078 kb on - strand, within dppDat 659.101 kb on + strand, within dppDat 659.127 kb on - strand, within dppDat 659.268 kb on + strand, within dppDat 659.311 kb on - strand, within dppDat 659.332 kb on + strand, within dppDat 659.539 kb on + strand, within dppDat 659.539 kb on + strand, within dppDat 659.585 kb on - strand, within dppDat 659.618 kb on + strand, within dppDat 659.628 kb on - strand, within dppDat 659.690 kb on + strand, within dppDat 659.914 kb on - strandat 659.914 kb on - strandat 659.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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657,097 - +0.7
657,169 - ddpB JDDGAC_03815 0.14 +1.0
657,215 - ddpB JDDGAC_03815 0.19 +0.9
657,219 - ddpB JDDGAC_03815 0.19 -0.3
657,306 + ddpB JDDGAC_03815 0.27 -0.1
657,431 + ddpB JDDGAC_03815 0.40 -0.0
657,512 + ddpB JDDGAC_03815 0.48 +0.1
657,727 + ddpB JDDGAC_03815 0.69 +1.1
657,776 + ddpB JDDGAC_03815 0.73 +1.5
657,776 + ddpB JDDGAC_03815 0.73 +1.5
657,777 - ddpB JDDGAC_03815 0.74 +0.9
657,777 - ddpB JDDGAC_03815 0.74 +2.5
657,777 - ddpB JDDGAC_03815 0.74 +1.2
657,914 + ddpB JDDGAC_03815 0.87 -2.5
657,914 + ddpB JDDGAC_03815 0.87 +1.7
658,003 + +0.6
658,072 + +0.7
658,165 + ddpC JDDGAC_03820 0.13 -1.2
658,168 + ddpC JDDGAC_03820 0.14 -0.3
658,471 + ddpC JDDGAC_03820 0.48 +0.8
658,529 + ddpC JDDGAC_03820 0.54 +1.3
658,554 + ddpC JDDGAC_03820 0.57 +0.9
658,583 - ddpC JDDGAC_03820 0.60 -0.4
658,598 + ddpC JDDGAC_03820 0.62 +0.8
658,598 + ddpC JDDGAC_03820 0.62 +0.8
658,599 - ddpC JDDGAC_03820 0.62 +1.0
658,602 + ddpC JDDGAC_03820 0.62 +0.5
658,603 - ddpC JDDGAC_03820 0.62 +0.3
658,658 + ddpC JDDGAC_03820 0.68 -1.7
658,658 + ddpC JDDGAC_03820 0.68 -0.0
658,723 + ddpC JDDGAC_03820 0.76 -1.0
658,809 + ddpC JDDGAC_03820 0.85 +0.3
658,877 + +0.2
659,078 - dppD JDDGAC_03825 0.14 -0.6
659,101 + dppD JDDGAC_03825 0.17 -1.3
659,127 - dppD JDDGAC_03825 0.19 +0.2
659,268 + dppD JDDGAC_03825 0.34 -0.6
659,311 - dppD JDDGAC_03825 0.38 -1.6
659,332 + dppD JDDGAC_03825 0.40 -0.3
659,539 + dppD JDDGAC_03825 0.61 -0.7
659,539 + dppD JDDGAC_03825 0.61 +1.1
659,585 - dppD JDDGAC_03825 0.66 -0.1
659,618 + dppD JDDGAC_03825 0.69 -0.6
659,628 - dppD JDDGAC_03825 0.70 +0.4
659,690 + dppD JDDGAC_03825 0.76 -0.8
659,914 - +0.6
659,914 - +1.4
659,929 + -0.6

Or see this region's nucleotide sequence