Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hxpB and yniB are separated by 146 nucleotides yniB and yniA are separated by 40 nucleotides yniA and ydiZ are separated by 105 nucleotides ydiZ and pfkB are separated by 100 nucleotides
JDDGAC_01590: hxpB - hexitol phosphatase HxpB, at 279,478 to 280,146
hxpB
JDDGAC_01595: yniB - Uncharacterized protein YniB, at 280,293 to 280,829
yniB
JDDGAC_01600: yniA - putative ketoamine kinase YniA, at 280,870 to 281,730
yniA
JDDGAC_01605: ydiZ - Uncharacterized protein YdiZ, at 281,836 to 282,126
ydiZ
JDDGAC_01610: pfkB - 6-phosphofructokinase II, at 282,227 to 283,156
pfkB
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.919 kb on + strand, within hxpB at 279.963 kb on - strand, within hxpB at 279.998 kb on - strand, within hxpB at 280.093 kb on - strand at 280.108 kb on - strand at 280.108 kb on - strand at 280.148 kb on - strand at 280.148 kb on - strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.169 kb on + strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.170 kb on - strand at 280.181 kb on - strand at 280.184 kb on - strand at 280.247 kb on + strand at 280.247 kb on + strand at 280.248 kb on - strand at 280.254 kb on - strand at 280.258 kb on + strand at 280.259 kb on - strand at 280.277 kb on + strand at 280.337 kb on + strand at 280.511 kb on + strand, within yniB at 280.533 kb on - strand, within yniB at 280.718 kb on + strand, within yniB at 280.718 kb on + strand, within yniB at 280.719 kb on - strand, within yniB at 280.764 kb on + strand, within yniB at 280.764 kb on + strand, within yniB at 280.765 kb on - strand, within yniB at 280.778 kb on + strand at 280.784 kb on + strand at 280.880 kb on - strand at 280.883 kb on - strand at 281.477 kb on + strand, within yniA at 281.622 kb on - strand, within yniA at 281.932 kb on - strand, within ydiZ at 281.932 kb on - strand, within ydiZ at 281.958 kb on + strand, within ydiZ at 281.958 kb on + strand, within ydiZ at 281.959 kb on - strand, within ydiZ at 281.959 kb on - strand, within ydiZ at 281.991 kb on + strand, within ydiZ at 281.992 kb on - strand, within ydiZ at 281.992 kb on - strand, within ydiZ at 281.992 kb on - strand, within ydiZ at 282.042 kb on - strand, within ydiZ at 282.072 kb on + strand, within ydiZ at 282.073 kb on - strand, within ydiZ at 282.094 kb on + strand, within ydiZ at 282.102 kb on - strand at 282.127 kb on - strand at 282.162 kb on + strand at 282.163 kb on - strand at 282.163 kb on - strand at 282.388 kb on + strand, within pfkB at 282.619 kb on + strand, within pfkB at 282.641 kb on + strand, within pfkB
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 279,919 + hxpB JDDGAC_01590 0.66 +0.5 279,963 - hxpB JDDGAC_01590 0.72 +0.4 279,998 - hxpB JDDGAC_01590 0.78 -0.4 280,093 - +0.8 280,108 - +0.7 280,108 - +0.1 280,148 - +0.4 280,148 - +0.7 280,169 + +0.4 280,169 + -0.5 280,169 + -0.1 280,169 + +1.4 280,169 + -1.0 280,170 - -0.5 280,170 - +0.0 280,170 - +1.4 280,170 - -1.2 280,181 - -2.3 280,184 - -0.3 280,247 + +0.0 280,247 + -0.7 280,248 - +0.8 280,254 - -0.0 280,258 + -0.3 280,259 - -0.3 280,277 + -0.2 280,337 + +0.3 280,511 + yniB JDDGAC_01595 0.41 +1.6 280,533 - yniB JDDGAC_01595 0.45 -1.0 280,718 + yniB JDDGAC_01595 0.79 +1.0 280,718 + yniB JDDGAC_01595 0.79 -1.1 280,719 - yniB JDDGAC_01595 0.79 +0.8 280,764 + yniB JDDGAC_01595 0.88 -0.5 280,764 + yniB JDDGAC_01595 0.88 -0.4 280,765 - yniB JDDGAC_01595 0.88 -1.0 280,778 + -0.8 280,784 + +0.3 280,880 - +1.2 280,883 - +0.3 281,477 + yniA JDDGAC_01600 0.70 +1.3 281,622 - yniA JDDGAC_01600 0.87 +0.8 281,932 - ydiZ JDDGAC_01605 0.33 +0.6 281,932 - ydiZ JDDGAC_01605 0.33 -1.3 281,958 + ydiZ JDDGAC_01605 0.42 +0.2 281,958 + ydiZ JDDGAC_01605 0.42 -1.1 281,959 - ydiZ JDDGAC_01605 0.42 +0.7 281,959 - ydiZ JDDGAC_01605 0.42 -0.5 281,991 + ydiZ JDDGAC_01605 0.53 -2.1 281,992 - ydiZ JDDGAC_01605 0.54 +1.1 281,992 - ydiZ JDDGAC_01605 0.54 -0.3 281,992 - ydiZ JDDGAC_01605 0.54 -0.8 282,042 - ydiZ JDDGAC_01605 0.71 +1.5 282,072 + ydiZ JDDGAC_01605 0.81 -0.0 282,073 - ydiZ JDDGAC_01605 0.81 +1.2 282,094 + ydiZ JDDGAC_01605 0.89 -0.2 282,102 - -0.4 282,127 - +1.8 282,162 + -0.1 282,163 - +0.9 282,163 - +0.3 282,388 + pfkB JDDGAC_01610 0.17 -2.1 282,619 + pfkB JDDGAC_01610 0.42 -0.0 282,641 + pfkB JDDGAC_01610 0.45 +1.6
Or see this region's nucleotide sequence