Strain Fitness in Escherichia coli ECRC98 around JDDGAC_01580

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntydjO and tcyP are separated by 50 nucleotidestcyP and ybcI are separated by 132 nucleotidesybcI and hxpB are separated by 162 nucleotides JDDGAC_01575: ydjO - Uncharacterized protein YdjO, at 276,395 to 277,150 ydjO JDDGAC_01580: tcyP - cystine/sulfocysteine:cation symporter, at 277,201 to 278,592 tcyP JDDGAC_01585: ybcI - metal-dependent hydrolase, at 278,725 to 279,315 ybcI JDDGAC_01590: hxpB - hexitol phosphatase HxpB, at 279,478 to 280,146 hxpB Position (kb) 277 278 279Strain fitness (log2 ratio) -2 -1 0 1at 277.155 kb on + strandat 277.513 kb on - strand, within tcyPat 277.719 kb on - strand, within tcyPat 277.774 kb on - strand, within tcyPat 277.907 kb on - strand, within tcyPat 278.032 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.133 kb on - strand, within tcyPat 278.137 kb on - strand, within tcyPat 278.137 kb on - strand, within tcyPat 278.262 kb on + strand, within tcyPat 278.263 kb on - strand, within tcyPat 278.398 kb on - strand, within tcyPat 278.419 kb on - strand, within tcyPat 278.521 kb on - strandat 278.614 kb on - strandat 278.638 kb on + strandat 278.745 kb on + strandat 278.748 kb on + strandat 278.749 kb on - strandat 278.776 kb on - strandat 278.974 kb on + strand, within ybcIat 278.975 kb on - strand, within ybcIat 279.216 kb on + strand, within ybcIat 279.217 kb on - strand, within ybcIat 279.285 kb on + strandat 279.318 kb on + strandat 279.535 kb on + strandat 279.535 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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277,155 + -1.4
277,513 - tcyP JDDGAC_01580 0.22 -0.2
277,719 - tcyP JDDGAC_01580 0.37 -2.6
277,774 - tcyP JDDGAC_01580 0.41 +0.1
277,907 - tcyP JDDGAC_01580 0.51 -0.4
278,032 - tcyP JDDGAC_01580 0.60 -0.7
278,133 - tcyP JDDGAC_01580 0.67 -1.8
278,133 - tcyP JDDGAC_01580 0.67 -0.2
278,133 - tcyP JDDGAC_01580 0.67 -1.4
278,133 - tcyP JDDGAC_01580 0.67 -0.4
278,133 - tcyP JDDGAC_01580 0.67 +0.6
278,133 - tcyP JDDGAC_01580 0.67 -1.3
278,137 - tcyP JDDGAC_01580 0.67 -0.0
278,137 - tcyP JDDGAC_01580 0.67 -0.0
278,262 + tcyP JDDGAC_01580 0.76 -0.8
278,263 - tcyP JDDGAC_01580 0.76 +1.1
278,398 - tcyP JDDGAC_01580 0.86 +1.5
278,419 - tcyP JDDGAC_01580 0.88 +0.8
278,521 - -1.4
278,614 - +0.0
278,638 + -0.3
278,745 + +0.8
278,748 + -0.6
278,749 - +0.1
278,776 - +0.6
278,974 + ybcI JDDGAC_01585 0.42 -0.3
278,975 - ybcI JDDGAC_01585 0.42 -1.0
279,216 + ybcI JDDGAC_01585 0.83 -0.1
279,217 - ybcI JDDGAC_01585 0.83 +0.3
279,285 + +0.6
279,318 + -1.0
279,535 + -0.3
279,535 + +0.1

Or see this region's nucleotide sequence