Strain Fitness in Erwinia amylovora T8 around OLJFJH_03650

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03645 and OLJFJH_03650 are separated by 986 nucleotidesOLJFJH_03650 and OLJFJH_03655 are separated by 260 nucleotidesOLJFJH_03655 and OLJFJH_03660 are separated by 209 nucleotides OLJFJH_03645: OLJFJH_03645 - Na+/Pi-cotransporter, at 704,735 to 706,360 _03645 OLJFJH_03650: OLJFJH_03650 - homoserine O-succinyltransferase, at 707,347 to 708,276 _03650 OLJFJH_03655: OLJFJH_03655 - 5S ribosomal RNA, at 708,537 to 708,652 _03655 OLJFJH_03660: OLJFJH_03660 - 23S ribosomal RNA, at 708,862 to 711,768 _03660 Position (kb) 707 708 709Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 706.412 kb on + strandat 706.413 kb on - strandat 706.426 kb on + strandat 706.514 kb on + strandat 706.584 kb on + strandat 706.612 kb on + strandat 706.623 kb on + strandat 706.734 kb on + strandat 707.207 kb on - strandat 707.250 kb on - strandat 707.250 kb on - strandat 707.267 kb on - strandat 707.332 kb on + strandat 707.396 kb on + strandat 707.402 kb on + strandat 707.402 kb on + strandat 707.402 kb on + strandat 707.406 kb on - strandat 707.565 kb on - strand, within OLJFJH_03650at 707.618 kb on + strand, within OLJFJH_03650at 707.645 kb on + strand, within OLJFJH_03650at 707.645 kb on + strand, within OLJFJH_03650at 707.645 kb on + strand, within OLJFJH_03650at 707.645 kb on + strand, within OLJFJH_03650at 707.645 kb on + strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.646 kb on - strand, within OLJFJH_03650at 707.647 kb on + strand, within OLJFJH_03650at 707.647 kb on + strand, within OLJFJH_03650at 707.648 kb on - strand, within OLJFJH_03650at 707.648 kb on - strand, within OLJFJH_03650at 707.648 kb on - strand, within OLJFJH_03650at 707.648 kb on - strand, within OLJFJH_03650at 707.664 kb on - strand, within OLJFJH_03650at 707.672 kb on - strand, within OLJFJH_03650at 707.722 kb on - strand, within OLJFJH_03650at 707.758 kb on + strand, within OLJFJH_03650at 707.759 kb on - strand, within OLJFJH_03650at 707.759 kb on - strand, within OLJFJH_03650at 707.759 kb on - strand, within OLJFJH_03650at 707.759 kb on - strand, within OLJFJH_03650at 707.759 kb on - strand, within OLJFJH_03650at 707.761 kb on + strand, within OLJFJH_03650at 707.762 kb on - strand, within OLJFJH_03650at 707.763 kb on + strand, within OLJFJH_03650at 707.764 kb on - strand, within OLJFJH_03650at 707.820 kb on - strand, within OLJFJH_03650at 707.830 kb on + strand, within OLJFJH_03650at 707.873 kb on - strand, within OLJFJH_03650at 707.893 kb on + strand, within OLJFJH_03650at 707.893 kb on + strand, within OLJFJH_03650at 707.894 kb on - strand, within OLJFJH_03650at 707.894 kb on - strand, within OLJFJH_03650at 707.894 kb on - strand, within OLJFJH_03650at 707.983 kb on - strand, within OLJFJH_03650at 707.992 kb on + strand, within OLJFJH_03650at 707.993 kb on - strand, within OLJFJH_03650at 707.994 kb on + strand, within OLJFJH_03650at 708.040 kb on - strand, within OLJFJH_03650at 708.071 kb on - strand, within OLJFJH_03650at 708.071 kb on - strand, within OLJFJH_03650at 708.071 kb on - strand, within OLJFJH_03650at 708.201 kb on + strandat 708.201 kb on + strandat 708.250 kb on + strandat 708.387 kb on + strandat 708.387 kb on + strandat 708.388 kb on - strandat 708.430 kb on + strandat 708.432 kb on + strandat 708.461 kb on + strandat 708.461 kb on + strandat 708.471 kb on - strandat 708.473 kb on - strandat 708.475 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-3
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706,412 + -0.7
706,413 - -1.2
706,426 + -0.4
706,514 + +0.0
706,584 + +1.3
706,612 + +0.2
706,623 + +0.2
706,734 + -0.5
707,207 - +4.6
707,250 - -0.6
707,250 - +0.4
707,267 - +0.5
707,332 + -0.6
707,396 + +0.5
707,402 + -1.8
707,402 + -1.6
707,402 + -2.8
707,406 - -3.7
707,565 - OLJFJH_03650 0.23 -1.6
707,618 + OLJFJH_03650 0.29 -2.4
707,645 + OLJFJH_03650 0.32 -1.6
707,645 + OLJFJH_03650 0.32 -2.9
707,645 + OLJFJH_03650 0.32 -2.0
707,645 + OLJFJH_03650 0.32 -2.3
707,645 + OLJFJH_03650 0.32 +0.4
707,646 - OLJFJH_03650 0.32 -0.9
707,646 - OLJFJH_03650 0.32 -2.5
707,646 - OLJFJH_03650 0.32 -1.7
707,646 - OLJFJH_03650 0.32 -0.6
707,646 - OLJFJH_03650 0.32 -3.8
707,646 - OLJFJH_03650 0.32 +0.2
707,646 - OLJFJH_03650 0.32 -1.7
707,647 + OLJFJH_03650 0.32 -3.1
707,647 + OLJFJH_03650 0.32 -3.0
707,648 - OLJFJH_03650 0.32 -3.1
707,648 - OLJFJH_03650 0.32 -3.1
707,648 - OLJFJH_03650 0.32 -2.1
707,648 - OLJFJH_03650 0.32 -2.4
707,664 - OLJFJH_03650 0.34 -3.9
707,672 - OLJFJH_03650 0.35 -2.4
707,722 - OLJFJH_03650 0.40 -1.4
707,758 + OLJFJH_03650 0.44 -1.3
707,759 - OLJFJH_03650 0.44 -1.6
707,759 - OLJFJH_03650 0.44 -3.3
707,759 - OLJFJH_03650 0.44 -2.4
707,759 - OLJFJH_03650 0.44 -0.3
707,759 - OLJFJH_03650 0.44 -2.0
707,761 + OLJFJH_03650 0.45 -1.5
707,762 - OLJFJH_03650 0.45 -2.4
707,763 + OLJFJH_03650 0.45 -2.6
707,764 - OLJFJH_03650 0.45 -3.2
707,820 - OLJFJH_03650 0.51 -2.4
707,830 + OLJFJH_03650 0.52 -2.1
707,873 - OLJFJH_03650 0.57 -1.8
707,893 + OLJFJH_03650 0.59 -1.9
707,893 + OLJFJH_03650 0.59 -2.1
707,894 - OLJFJH_03650 0.59 -1.8
707,894 - OLJFJH_03650 0.59 -2.6
707,894 - OLJFJH_03650 0.59 +1.1
707,983 - OLJFJH_03650 0.68 -1.7
707,992 + OLJFJH_03650 0.69 -0.3
707,993 - OLJFJH_03650 0.69 -2.5
707,994 + OLJFJH_03650 0.70 -2.7
708,040 - OLJFJH_03650 0.75 -1.6
708,071 - OLJFJH_03650 0.78 +0.4
708,071 - OLJFJH_03650 0.78 -1.8
708,071 - OLJFJH_03650 0.78 -2.2
708,201 + -1.7
708,201 + -2.3
708,250 + -2.2
708,387 + -1.0
708,387 + +0.7
708,388 - +0.8
708,430 + -1.3
708,432 + -0.0
708,461 + -0.1
708,461 + +1.6
708,471 - -0.6
708,473 - +0.3
708,475 - -0.6

Or see this region's nucleotide sequence