Strain Fitness in Erwinia amylovora T8 around OLJFJH_03445

Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_03435 and OLJFJH_03440 are separated by 234 nucleotidesOLJFJH_03440 and OLJFJH_03445 are separated by 113 nucleotidesOLJFJH_03445 and OLJFJH_03450 are separated by 114 nucleotides OLJFJH_03435: OLJFJH_03435 - invasin, at 662,115 to 666,200 _03435 OLJFJH_03440: OLJFJH_03440 - Uncharacterized protein conserved in bacteria, at 666,435 to 666,641 _03440 OLJFJH_03445: OLJFJH_03445 - Uncharacterised protein family UPF0047, at 666,755 to 667,174 _03445 OLJFJH_03450: OLJFJH_03450 - aromatic amino acid aminotransferase, at 667,289 to 668,482 _03450 Position (kb) 666 667 668Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 665.914 kb on + strandat 665.915 kb on - strandat 666.005 kb on - strandat 666.191 kb on + strandat 666.209 kb on + strandat 666.256 kb on - strandat 666.329 kb on + strandat 666.473 kb on - strand, within OLJFJH_03440at 666.473 kb on - strand, within OLJFJH_03440at 666.475 kb on + strand, within OLJFJH_03440at 666.573 kb on + strand, within OLJFJH_03440at 666.573 kb on + strand, within OLJFJH_03440at 666.574 kb on - strand, within OLJFJH_03440at 666.574 kb on - strand, within OLJFJH_03440at 666.603 kb on + strand, within OLJFJH_03440at 666.604 kb on - strand, within OLJFJH_03440at 666.604 kb on - strand, within OLJFJH_03440at 666.610 kb on - strand, within OLJFJH_03440at 666.717 kb on - strandat 666.728 kb on - strandat 666.736 kb on - strandat 666.744 kb on + strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.745 kb on - strandat 666.750 kb on + strandat 666.750 kb on + strandat 666.824 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.826 kb on + strand, within OLJFJH_03445at 666.827 kb on - strand, within OLJFJH_03445at 666.838 kb on + strand, within OLJFJH_03445at 666.839 kb on - strand, within OLJFJH_03445at 666.945 kb on + strand, within OLJFJH_03445at 666.946 kb on - strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.042 kb on + strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.043 kb on - strand, within OLJFJH_03445at 667.062 kb on - strand, within OLJFJH_03445at 667.062 kb on - strand, within OLJFJH_03445at 667.192 kb on + strandat 667.193 kb on - strandat 667.193 kb on - strandat 667.204 kb on + strandat 667.204 kb on + strandat 667.204 kb on + strandat 667.205 kb on - strandat 667.205 kb on - strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.290 kb on + strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.291 kb on - strandat 667.355 kb on + strandat 667.355 kb on + strandat 667.355 kb on + strandat 667.356 kb on - strandat 667.356 kb on - strandat 667.377 kb on + strandat 667.420 kb on + strand, within OLJFJH_03450at 667.441 kb on + strand, within OLJFJH_03450at 667.442 kb on - strand, within OLJFJH_03450at 667.442 kb on - strand, within OLJFJH_03450at 667.529 kb on - strand, within OLJFJH_03450at 667.529 kb on - strand, within OLJFJH_03450at 667.534 kb on + strand, within OLJFJH_03450at 667.582 kb on + strand, within OLJFJH_03450at 667.614 kb on + strand, within OLJFJH_03450at 667.632 kb on + strand, within OLJFJH_03450at 667.633 kb on - strand, within OLJFJH_03450at 667.637 kb on - strand, within OLJFJH_03450at 667.756 kb on + strand, within OLJFJH_03450at 667.756 kb on + strand, within OLJFJH_03450at 667.760 kb on + strand, within OLJFJH_03450at 667.804 kb on - strand, within OLJFJH_03450at 667.804 kb on - strand, within OLJFJH_03450at 668.130 kb on + strand, within OLJFJH_03450at 668.137 kb on + strand, within OLJFJH_03450

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-3
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665,914 + +0.7
665,915 - +0.2
666,005 - +0.7
666,191 + -0.1
666,209 + +1.0
666,256 - -0.0
666,329 + -0.6
666,473 - OLJFJH_03440 0.18 +0.5
666,473 - OLJFJH_03440 0.18 -0.2
666,475 + OLJFJH_03440 0.19 -1.2
666,573 + OLJFJH_03440 0.67 +1.9
666,573 + OLJFJH_03440 0.67 +0.8
666,574 - OLJFJH_03440 0.67 -1.1
666,574 - OLJFJH_03440 0.67 +0.7
666,603 + OLJFJH_03440 0.81 +0.5
666,604 - OLJFJH_03440 0.82 +0.2
666,604 - OLJFJH_03440 0.82 +0.3
666,610 - OLJFJH_03440 0.85 +1.4
666,717 - -2.5
666,728 - -0.2
666,736 - +0.0
666,744 + -0.2
666,745 - -0.8
666,745 - +2.2
666,745 - -0.7
666,745 - -1.3
666,745 - -1.3
666,745 - +4.2
666,750 + +1.2
666,750 + -0.4
666,824 + OLJFJH_03445 0.16 +0.2
666,826 + OLJFJH_03445 0.17 -0.7
666,826 + OLJFJH_03445 0.17 +0.5
666,826 + OLJFJH_03445 0.17 +0.0
666,826 + OLJFJH_03445 0.17 +0.5
666,826 + OLJFJH_03445 0.17 -0.1
666,827 - OLJFJH_03445 0.17 +1.7
666,838 + OLJFJH_03445 0.20 -0.4
666,839 - OLJFJH_03445 0.20 +0.7
666,945 + OLJFJH_03445 0.45 +0.7
666,946 - OLJFJH_03445 0.45 -0.4
667,042 + OLJFJH_03445 0.68 -0.5
667,042 + OLJFJH_03445 0.68 +0.8
667,042 + OLJFJH_03445 0.68 +0.7
667,043 - OLJFJH_03445 0.69 +5.6
667,043 - OLJFJH_03445 0.69 -0.6
667,043 - OLJFJH_03445 0.69 +1.0
667,043 - OLJFJH_03445 0.69 +0.7
667,043 - OLJFJH_03445 0.69 +0.6
667,062 - OLJFJH_03445 0.73 -0.3
667,062 - OLJFJH_03445 0.73 -0.5
667,192 + -0.3
667,193 - -0.4
667,193 - +0.2
667,204 + -1.4
667,204 + -0.6
667,204 + +0.2
667,205 - +0.6
667,205 - +0.5
667,290 + +0.9
667,290 + +0.2
667,290 + -0.9
667,290 + +1.2
667,290 + +0.9
667,290 + -0.0
667,290 + -0.5
667,290 + -1.2
667,290 + -0.1
667,290 + +2.6
667,291 - -0.6
667,291 - -0.2
667,291 - -0.2
667,291 - -0.7
667,291 - +0.9
667,355 + -0.5
667,355 + -1.2
667,355 + -2.2
667,356 - -1.6
667,356 - -1.1
667,377 + -0.5
667,420 + OLJFJH_03450 0.11 -0.5
667,441 + OLJFJH_03450 0.13 +0.1
667,442 - OLJFJH_03450 0.13 -0.5
667,442 - OLJFJH_03450 0.13 +0.6
667,529 - OLJFJH_03450 0.20 +0.9
667,529 - OLJFJH_03450 0.20 -0.3
667,534 + OLJFJH_03450 0.21 -0.9
667,582 + OLJFJH_03450 0.25 -0.7
667,614 + OLJFJH_03450 0.27 +0.2
667,632 + OLJFJH_03450 0.29 +0.2
667,633 - OLJFJH_03450 0.29 -2.1
667,637 - OLJFJH_03450 0.29 +0.5
667,756 + OLJFJH_03450 0.39 +0.9
667,756 + OLJFJH_03450 0.39 -0.3
667,760 + OLJFJH_03450 0.39 -0.6
667,804 - OLJFJH_03450 0.43 +0.2
667,804 - OLJFJH_03450 0.43 +0.1
668,130 + OLJFJH_03450 0.70 -0.2
668,137 + OLJFJH_03450 0.71 -0.3

Or see this region's nucleotide sequence