Experiment: Matrix:pear;Phage:PBS;Temp:28;Samp:16-3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_01340 and OLJFJH_01345 are separated by 41 nucleotides OLJFJH_01345 and OLJFJH_01350 are separated by 167 nucleotides OLJFJH_01350 and OLJFJH_01355 are separated by 211 nucleotides
OLJFJH_01340: OLJFJH_01340 - RNA polymerase-associated protein RapA, at 207,544 to 210,450
_01340
OLJFJH_01345: OLJFJH_01345 - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 210,492 to 211,145
_01345
OLJFJH_01350: OLJFJH_01350 - co-chaperone DjlA, at 211,313 to 212,137
_01350
OLJFJH_01355: OLJFJH_01355 - LPS assembly protein LptD, at 212,349 to 214,724
_01355
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 210.448 kb on + strand at 210.491 kb on + strand at 210.501 kb on + strand at 210.502 kb on - strand at 210.772 kb on - strand, within OLJFJH_01345 at 210.901 kb on - strand, within OLJFJH_01345 at 210.987 kb on - strand, within OLJFJH_01345 at 210.987 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.027 kb on - strand, within OLJFJH_01345 at 211.259 kb on + strand at 211.259 kb on + strand at 211.260 kb on - strand at 211.348 kb on - strand at 211.348 kb on - strand at 211.348 kb on - strand at 211.671 kb on + strand, within OLJFJH_01350 at 211.671 kb on + strand, within OLJFJH_01350 at 211.671 kb on + strand, within OLJFJH_01350 at 211.690 kb on + strand, within OLJFJH_01350 at 212.045 kb on - strand, within OLJFJH_01350 at 212.097 kb on - strand at 212.115 kb on - strand at 212.117 kb on + strand at 212.137 kb on + strand at 212.178 kb on + strand at 212.178 kb on + strand at 212.202 kb on - strand at 212.206 kb on + strand at 212.212 kb on + strand at 212.235 kb on + strand at 212.235 kb on + strand at 212.265 kb on + strand at 212.265 kb on + strand at 212.266 kb on - strand at 212.266 kb on - strand at 212.298 kb on + strand at 212.298 kb on + strand at 212.298 kb on + strand at 212.299 kb on - strand at 212.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:PBS;Temp:28;Samp:16-3 remove 210,448 + -0.9 210,491 + +1.5 210,501 + +1.2 210,502 - +0.1 210,772 - OLJFJH_01345 0.43 +0.2 210,901 - OLJFJH_01345 0.63 +0.2 210,987 - OLJFJH_01345 0.76 -1.3 210,987 - OLJFJH_01345 0.76 -0.6 211,027 - OLJFJH_01345 0.82 -0.6 211,027 - OLJFJH_01345 0.82 +0.9 211,027 - OLJFJH_01345 0.82 +0.3 211,027 - OLJFJH_01345 0.82 -1.6 211,259 + +0.9 211,259 + +0.6 211,260 - +1.2 211,348 - -0.3 211,348 - -2.7 211,348 - -2.1 211,671 + OLJFJH_01350 0.43 -1.7 211,671 + OLJFJH_01350 0.43 -2.2 211,671 + OLJFJH_01350 0.43 -1.8 211,690 + OLJFJH_01350 0.46 -0.5 212,045 - OLJFJH_01350 0.89 -1.0 212,097 - -0.8 212,115 - +1.0 212,117 + -0.5 212,137 + -1.2 212,178 + -0.7 212,178 + -0.9 212,202 - +2.2 212,206 + -2.3 212,212 + -0.1 212,235 + -0.4 212,235 + -0.8 212,265 + -0.2 212,265 + +3.6 212,266 - +0.0 212,266 - +0.0 212,298 + -0.9 212,298 + +0.4 212,298 + +0.3 212,299 - -0.3 212,299 - +1.3
Or see this region's nucleotide sequence