Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS13435

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS13430 and A4249_RS13435 are separated by 1 nucleotidesA4249_RS13435 and A4249_RS13440 are separated by 53 nucleotidesA4249_RS13440 and A4249_RS13445 are separated by 1 nucleotides A4249_RS13430: A4249_RS13430 - succinate dehydrogenase flavoprotein subunit, at 2,713,398 to 2,715,182 _RS13430 A4249_RS13435: A4249_RS13435 - succinate dehydrogenase iron-sulfur subunit, at 2,715,184 to 2,715,978 _RS13435 A4249_RS13440: A4249_RS13440 - 2Fe-2S iron-sulfur cluster-binding protein, at 2,716,032 to 2,716,352 _RS13440 A4249_RS13445: A4249_RS13445 - kinase, at 2,716,354 to 2,717,169 _RS13445 Position (kb) 2715 2716Strain fitness (log2 ratio) -2 -1 0 1at 2716.020 kb on + strandat 2716.020 kb on + strandat 2716.020 kb on + strandat 2716.021 kb on - strandat 2716.021 kb on - strandat 2716.021 kb on - strandat 2716.442 kb on + strand, within A4249_RS13445at 2716.442 kb on + strand, within A4249_RS13445at 2716.443 kb on - strand, within A4249_RS13445at 2716.537 kb on + strand, within A4249_RS13445at 2716.537 kb on + strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.538 kb on - strand, within A4249_RS13445at 2716.785 kb on - strand, within A4249_RS13445at 2716.901 kb on - strand, within A4249_RS13445at 2716.901 kb on - strand, within A4249_RS13445

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
2,716,020 + +1.5
2,716,020 + -0.1
2,716,020 + -0.6
2,716,021 - +0.9
2,716,021 - +0.1
2,716,021 - +0.5
2,716,442 + A4249_RS13445 0.11 +1.4
2,716,442 + A4249_RS13445 0.11 +0.2
2,716,443 - A4249_RS13445 0.11 -1.4
2,716,537 + A4249_RS13445 0.22 -0.9
2,716,537 + A4249_RS13445 0.22 -0.7
2,716,538 - A4249_RS13445 0.23 -0.9
2,716,538 - A4249_RS13445 0.23 -0.2
2,716,538 - A4249_RS13445 0.23 +0.1
2,716,538 - A4249_RS13445 0.23 +0.4
2,716,538 - A4249_RS13445 0.23 -0.1
2,716,538 - A4249_RS13445 0.23 -1.8
2,716,785 - A4249_RS13445 0.53 -0.6
2,716,901 - A4249_RS13445 0.67 -1.1
2,716,901 - A4249_RS13445 0.67 +0.1

Or see this region's nucleotide sequence