Experiment: Inosine 0.3728 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt A4249_RS13190 and A4249_RS13195 are separated by 1 nucleotides A4249_RS13195 and A4249_RS13200 are separated by 2 nucleotides
A4249_RS13190: A4249_RS13190 - 2-oxo acid dehydrogenase subunit E2, at 2,657,209 to 2,658,864
_RS13190
A4249_RS13195: A4249_RS13195 - alpha-ketoacid dehydrogenase subunit beta, at 2,658,866 to 2,659,990
_RS13195
A4249_RS13200: A4249_RS13200 - thiamine pyrophosphate-dependent enzyme, at 2,659,993 to 2,661,228
_RS13200
Position (kb)
2658
2659
2660 Strain fitness (log2 ratio)
-1
0
1
2 at 2657.918 kb on + strand, within A4249_RS13190 at 2657.919 kb on - strand, within A4249_RS13190 at 2657.919 kb on - strand, within A4249_RS13190 at 2658.241 kb on + strand, within A4249_RS13190 at 2658.242 kb on - strand, within A4249_RS13190 at 2658.361 kb on - strand, within A4249_RS13190 at 2658.485 kb on + strand, within A4249_RS13190 at 2658.485 kb on + strand, within A4249_RS13190 at 2658.485 kb on + strand, within A4249_RS13190 at 2658.486 kb on - strand, within A4249_RS13190 at 2658.486 kb on - strand, within A4249_RS13190 at 2658.927 kb on + strand at 2658.927 kb on + strand at 2658.928 kb on - strand at 2658.928 kb on - strand at 2659.000 kb on - strand, within A4249_RS13195 at 2659.272 kb on + strand, within A4249_RS13195 at 2659.273 kb on - strand, within A4249_RS13195 at 2659.273 kb on - strand, within A4249_RS13195 at 2659.356 kb on + strand, within A4249_RS13195 at 2659.356 kb on + strand, within A4249_RS13195 at 2659.357 kb on - strand, within A4249_RS13195 at 2659.431 kb on + strand, within A4249_RS13195 at 2659.468 kb on + strand, within A4249_RS13195 at 2659.469 kb on - strand, within A4249_RS13195 at 2659.469 kb on - strand, within A4249_RS13195 at 2659.559 kb on - strand, within A4249_RS13195 at 2659.614 kb on + strand, within A4249_RS13195 at 2659.614 kb on + strand, within A4249_RS13195 at 2659.615 kb on - strand, within A4249_RS13195 at 2659.615 kb on - strand, within A4249_RS13195 at 2659.623 kb on + strand, within A4249_RS13195 at 2659.623 kb on + strand, within A4249_RS13195 at 2659.623 kb on + strand, within A4249_RS13195 at 2659.629 kb on + strand, within A4249_RS13195 at 2659.629 kb on + strand, within A4249_RS13195 at 2659.629 kb on + strand, within A4249_RS13195 at 2659.629 kb on + strand, within A4249_RS13195 at 2659.629 kb on + strand, within A4249_RS13195 at 2659.630 kb on - strand, within A4249_RS13195 at 2659.630 kb on - strand, within A4249_RS13195 at 2659.630 kb on - strand, within A4249_RS13195 at 2659.630 kb on - strand, within A4249_RS13195 at 2659.789 kb on - strand, within A4249_RS13195 at 2659.789 kb on - strand, within A4249_RS13195 at 2660.046 kb on - strand at 2660.303 kb on + strand, within A4249_RS13200 at 2660.532 kb on - strand, within A4249_RS13200 at 2660.625 kb on - strand, within A4249_RS13200 at 2660.699 kb on + strand, within A4249_RS13200 at 2660.700 kb on - strand, within A4249_RS13200 at 2660.714 kb on + strand, within A4249_RS13200 at 2660.714 kb on + strand, within A4249_RS13200 at 2660.714 kb on + strand, within A4249_RS13200 at 2660.715 kb on - strand, within A4249_RS13200 at 2660.762 kb on + strand, within A4249_RS13200 at 2660.763 kb on - strand, within A4249_RS13200 at 2660.763 kb on - strand, within A4249_RS13200 at 2660.825 kb on + strand, within A4249_RS13200 at 2660.907 kb on - strand, within A4249_RS13200 at 2660.907 kb on - strand, within A4249_RS13200
Per-strain Table
Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C) remove 2,657,918 + A4249_RS13190 0.43 +1.1 2,657,919 - A4249_RS13190 0.43 +0.3 2,657,919 - A4249_RS13190 0.43 -0.5 2,658,241 + A4249_RS13190 0.62 -0.2 2,658,242 - A4249_RS13190 0.62 -0.0 2,658,361 - A4249_RS13190 0.70 +0.3 2,658,485 + A4249_RS13190 0.77 +0.9 2,658,485 + A4249_RS13190 0.77 -0.6 2,658,485 + A4249_RS13190 0.77 +0.5 2,658,486 - A4249_RS13190 0.77 +0.5 2,658,486 - A4249_RS13190 0.77 +0.3 2,658,927 + -0.6 2,658,927 + -0.3 2,658,928 - -0.5 2,658,928 - +1.1 2,659,000 - A4249_RS13195 0.12 -0.3 2,659,272 + A4249_RS13195 0.36 +0.5 2,659,273 - A4249_RS13195 0.36 +1.0 2,659,273 - A4249_RS13195 0.36 +0.1 2,659,356 + A4249_RS13195 0.44 +1.6 2,659,356 + A4249_RS13195 0.44 -1.5 2,659,357 - A4249_RS13195 0.44 -0.9 2,659,431 + A4249_RS13195 0.50 +2.3 2,659,468 + A4249_RS13195 0.54 -0.5 2,659,469 - A4249_RS13195 0.54 +1.9 2,659,469 - A4249_RS13195 0.54 +1.3 2,659,559 - A4249_RS13195 0.62 +0.1 2,659,614 + A4249_RS13195 0.66 -0.0 2,659,614 + A4249_RS13195 0.66 +0.4 2,659,615 - A4249_RS13195 0.67 -1.3 2,659,615 - A4249_RS13195 0.67 +1.4 2,659,623 + A4249_RS13195 0.67 +0.1 2,659,623 + A4249_RS13195 0.67 +1.1 2,659,623 + A4249_RS13195 0.67 +0.3 2,659,629 + A4249_RS13195 0.68 +0.5 2,659,629 + A4249_RS13195 0.68 +1.3 2,659,629 + A4249_RS13195 0.68 +0.1 2,659,629 + A4249_RS13195 0.68 +0.1 2,659,629 + A4249_RS13195 0.68 +2.3 2,659,630 - A4249_RS13195 0.68 +0.3 2,659,630 - A4249_RS13195 0.68 +0.3 2,659,630 - A4249_RS13195 0.68 -0.5 2,659,630 - A4249_RS13195 0.68 +0.7 2,659,789 - A4249_RS13195 0.82 -0.6 2,659,789 - A4249_RS13195 0.82 +1.6 2,660,046 - +1.1 2,660,303 + A4249_RS13200 0.25 +2.1 2,660,532 - A4249_RS13200 0.44 +0.7 2,660,625 - A4249_RS13200 0.51 +0.1 2,660,699 + A4249_RS13200 0.57 +1.3 2,660,700 - A4249_RS13200 0.57 +1.1 2,660,714 + A4249_RS13200 0.58 +0.1 2,660,714 + A4249_RS13200 0.58 -0.3 2,660,714 + A4249_RS13200 0.58 +1.7 2,660,715 - A4249_RS13200 0.58 -0.7 2,660,762 + A4249_RS13200 0.62 -0.1 2,660,763 - A4249_RS13200 0.62 +0.1 2,660,763 - A4249_RS13200 0.62 +0.9 2,660,825 + A4249_RS13200 0.67 +0.1 2,660,907 - A4249_RS13200 0.74 +1.4 2,660,907 - A4249_RS13200 0.74 +1.7
Or see this region's nucleotide sequence