Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12950

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12940 and A4249_RS12945 are separated by 99 nucleotidesA4249_RS12945 and A4249_RS12950 are separated by 153 nucleotidesA4249_RS12950 and A4249_RS12955 are separated by 0 nucleotidesA4249_RS12955 and A4249_RS12960 overlap by 4 nucleotides A4249_RS12940: A4249_RS12940 - threonine--tRNA ligase, at 2,594,424 to 2,596,352 _RS12940 A4249_RS12945: A4249_RS12945 - ferritin-like domain-containing protein, at 2,596,452 to 2,596,952 _RS12945 A4249_RS12950: A4249_RS12950 - ATP-binding protein, at 2,597,106 to 2,598,443 _RS12950 A4249_RS12955: A4249_RS12955 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,598,444 to 2,599,313 _RS12955 A4249_RS12960: A4249_RS12960 - pyrimidine 5'-nucleotidase, at 2,599,310 to 2,599,930 _RS12960 Position (kb) 2597 2598 2599Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2596.378 kb on + strandat 2596.378 kb on + strandat 2596.378 kb on + strandat 2596.378 kb on + strandat 2596.379 kb on - strandat 2596.379 kb on - strandat 2596.379 kb on - strandat 2596.387 kb on + strandat 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.503 kb on + strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.504 kb on - strand, within A4249_RS12945at 2596.506 kb on + strand, within A4249_RS12945at 2596.506 kb on + strand, within A4249_RS12945at 2596.506 kb on + strand, within A4249_RS12945at 2596.507 kb on - strand, within A4249_RS12945at 2596.582 kb on + strand, within A4249_RS12945at 2596.582 kb on + strand, within A4249_RS12945at 2596.583 kb on - strand, within A4249_RS12945at 2596.583 kb on - strand, within A4249_RS12945at 2596.592 kb on + strand, within A4249_RS12945at 2596.592 kb on + strand, within A4249_RS12945at 2596.592 kb on + strand, within A4249_RS12945at 2596.592 kb on + strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.593 kb on - strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.722 kb on + strand, within A4249_RS12945at 2596.723 kb on - strand, within A4249_RS12945at 2596.723 kb on - strand, within A4249_RS12945at 2596.723 kb on - strand, within A4249_RS12945at 2596.723 kb on - strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.782 kb on + strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.783 kb on - strand, within A4249_RS12945at 2596.953 kb on + strandat 2596.954 kb on - strandat 2596.954 kb on - strandat 2597.042 kb on + strandat 2597.052 kb on - strandat 2597.052 kb on - strandat 2597.059 kb on + strandat 2597.060 kb on - strandat 2597.168 kb on + strandat 2597.169 kb on - strandat 2597.169 kb on - strandat 2597.169 kb on - strandat 2597.169 kb on - strandat 2597.169 kb on - strandat 2597.175 kb on + strandat 2597.176 kb on - strandat 2597.210 kb on + strandat 2597.210 kb on + strandat 2597.299 kb on + strand, within A4249_RS12950at 2597.300 kb on - strand, within A4249_RS12950at 2597.394 kb on + strand, within A4249_RS12950at 2597.395 kb on - strand, within A4249_RS12950at 2597.395 kb on - strand, within A4249_RS12950at 2597.395 kb on - strand, within A4249_RS12950at 2597.445 kb on + strand, within A4249_RS12950at 2597.445 kb on + strand, within A4249_RS12950at 2597.445 kb on + strand, within A4249_RS12950at 2597.446 kb on - strand, within A4249_RS12950at 2597.446 kb on - strand, within A4249_RS12950at 2597.508 kb on + strand, within A4249_RS12950at 2597.508 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.873 kb on + strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2597.874 kb on - strand, within A4249_RS12950at 2598.093 kb on - strand, within A4249_RS12950at 2598.093 kb on - strand, within A4249_RS12950at 2598.146 kb on + strand, within A4249_RS12950at 2598.146 kb on + strand, within A4249_RS12950at 2598.147 kb on - strand, within A4249_RS12950at 2598.147 kb on - strand, within A4249_RS12950at 2598.147 kb on - strand, within A4249_RS12950at 2598.147 kb on - strand, within A4249_RS12950at 2598.441 kb on + strandat 2598.442 kb on - strandat 2599.376 kb on - strand, within A4249_RS12960

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,596,378 + -0.4
2,596,378 + +2.6
2,596,378 + +1.6
2,596,378 + -0.4
2,596,379 - -1.0
2,596,379 - +0.0
2,596,379 - -1.4
2,596,387 + -0.1
2,596,503 + A4249_RS12945 0.10 +0.2
2,596,503 + A4249_RS12945 0.10 -0.4
2,596,503 + A4249_RS12945 0.10 -0.9
2,596,503 + A4249_RS12945 0.10 +0.1
2,596,503 + A4249_RS12945 0.10 +0.0
2,596,503 + A4249_RS12945 0.10 -0.6
2,596,503 + A4249_RS12945 0.10 -1.1
2,596,503 + A4249_RS12945 0.10 -0.5
2,596,503 + A4249_RS12945 0.10 -0.3
2,596,503 + A4249_RS12945 0.10 +1.0
2,596,503 + A4249_RS12945 0.10 -1.6
2,596,503 + A4249_RS12945 0.10 -1.2
2,596,503 + A4249_RS12945 0.10 -0.4
2,596,503 + A4249_RS12945 0.10 -0.1
2,596,503 + A4249_RS12945 0.10 -0.8
2,596,503 + A4249_RS12945 0.10 +0.6
2,596,504 - A4249_RS12945 0.10 -0.1
2,596,504 - A4249_RS12945 0.10 +0.0
2,596,504 - A4249_RS12945 0.10 +0.8
2,596,504 - A4249_RS12945 0.10 +0.2
2,596,504 - A4249_RS12945 0.10 +0.3
2,596,504 - A4249_RS12945 0.10 -0.9
2,596,504 - A4249_RS12945 0.10 +0.6
2,596,504 - A4249_RS12945 0.10 +1.0
2,596,504 - A4249_RS12945 0.10 -1.3
2,596,504 - A4249_RS12945 0.10 -0.6
2,596,504 - A4249_RS12945 0.10 -0.8
2,596,504 - A4249_RS12945 0.10 -0.7
2,596,504 - A4249_RS12945 0.10 -1.0
2,596,504 - A4249_RS12945 0.10 +1.1
2,596,504 - A4249_RS12945 0.10 -0.4
2,596,504 - A4249_RS12945 0.10 -0.5
2,596,504 - A4249_RS12945 0.10 +0.1
2,596,504 - A4249_RS12945 0.10 -1.1
2,596,504 - A4249_RS12945 0.10 -0.8
2,596,506 + A4249_RS12945 0.11 -0.4
2,596,506 + A4249_RS12945 0.11 -0.6
2,596,506 + A4249_RS12945 0.11 -0.8
2,596,507 - A4249_RS12945 0.11 +0.1
2,596,582 + A4249_RS12945 0.26 -0.1
2,596,582 + A4249_RS12945 0.26 -0.9
2,596,583 - A4249_RS12945 0.26 +0.7
2,596,583 - A4249_RS12945 0.26 +0.6
2,596,592 + A4249_RS12945 0.28 -0.3
2,596,592 + A4249_RS12945 0.28 +1.5
2,596,592 + A4249_RS12945 0.28 -1.9
2,596,592 + A4249_RS12945 0.28 -2.2
2,596,593 - A4249_RS12945 0.28 -0.0
2,596,593 - A4249_RS12945 0.28 -1.0
2,596,593 - A4249_RS12945 0.28 -1.0
2,596,593 - A4249_RS12945 0.28 -2.8
2,596,593 - A4249_RS12945 0.28 -0.8
2,596,593 - A4249_RS12945 0.28 +0.0
2,596,593 - A4249_RS12945 0.28 +0.2
2,596,593 - A4249_RS12945 0.28 +0.1
2,596,593 - A4249_RS12945 0.28 -0.3
2,596,722 + A4249_RS12945 0.54 -0.3
2,596,722 + A4249_RS12945 0.54 +0.8
2,596,722 + A4249_RS12945 0.54 -1.1
2,596,722 + A4249_RS12945 0.54 +0.2
2,596,722 + A4249_RS12945 0.54 +2.1
2,596,722 + A4249_RS12945 0.54 +1.1
2,596,722 + A4249_RS12945 0.54 +0.0
2,596,722 + A4249_RS12945 0.54 -0.3
2,596,722 + A4249_RS12945 0.54 +0.2
2,596,722 + A4249_RS12945 0.54 -0.8
2,596,723 - A4249_RS12945 0.54 +1.3
2,596,723 - A4249_RS12945 0.54 -0.3
2,596,723 - A4249_RS12945 0.54 -0.3
2,596,723 - A4249_RS12945 0.54 +0.7
2,596,782 + A4249_RS12945 0.66 -0.2
2,596,782 + A4249_RS12945 0.66 -0.6
2,596,782 + A4249_RS12945 0.66 -0.4
2,596,782 + A4249_RS12945 0.66 -0.5
2,596,782 + A4249_RS12945 0.66 -1.6
2,596,782 + A4249_RS12945 0.66 -1.7
2,596,783 - A4249_RS12945 0.66 +1.0
2,596,783 - A4249_RS12945 0.66 +0.1
2,596,783 - A4249_RS12945 0.66 -1.0
2,596,783 - A4249_RS12945 0.66 +0.1
2,596,783 - A4249_RS12945 0.66 -1.6
2,596,783 - A4249_RS12945 0.66 -0.6
2,596,783 - A4249_RS12945 0.66 -0.0
2,596,953 + +0.6
2,596,954 - -0.1
2,596,954 - -0.1
2,597,042 + -0.6
2,597,052 - -0.5
2,597,052 - -0.9
2,597,059 + -0.1
2,597,060 - +1.1
2,597,168 + +0.9
2,597,169 - -0.1
2,597,169 - -0.6
2,597,169 - +0.8
2,597,169 - +0.5
2,597,169 - +0.1
2,597,175 + +0.6
2,597,176 - +1.9
2,597,210 + -1.5
2,597,210 + -0.5
2,597,299 + A4249_RS12950 0.14 +2.2
2,597,300 - A4249_RS12950 0.14 +0.4
2,597,394 + A4249_RS12950 0.22 -1.1
2,597,395 - A4249_RS12950 0.22 -1.6
2,597,395 - A4249_RS12950 0.22 -1.1
2,597,395 - A4249_RS12950 0.22 -0.3
2,597,445 + A4249_RS12950 0.25 -0.3
2,597,445 + A4249_RS12950 0.25 +1.3
2,597,445 + A4249_RS12950 0.25 +1.1
2,597,446 - A4249_RS12950 0.25 -1.0
2,597,446 - A4249_RS12950 0.25 -0.2
2,597,508 + A4249_RS12950 0.30 -0.4
2,597,508 + A4249_RS12950 0.30 -0.3
2,597,873 + A4249_RS12950 0.57 -0.7
2,597,873 + A4249_RS12950 0.57 -0.1
2,597,873 + A4249_RS12950 0.57 -1.9
2,597,873 + A4249_RS12950 0.57 -0.1
2,597,873 + A4249_RS12950 0.57 +0.6
2,597,873 + A4249_RS12950 0.57 -1.3
2,597,873 + A4249_RS12950 0.57 -0.1
2,597,873 + A4249_RS12950 0.57 +0.3
2,597,873 + A4249_RS12950 0.57 -0.5
2,597,873 + A4249_RS12950 0.57 +1.4
2,597,874 - A4249_RS12950 0.57 -0.1
2,597,874 - A4249_RS12950 0.57 +0.6
2,597,874 - A4249_RS12950 0.57 -0.5
2,597,874 - A4249_RS12950 0.57 +0.9
2,597,874 - A4249_RS12950 0.57 -0.3
2,597,874 - A4249_RS12950 0.57 -0.7
2,597,874 - A4249_RS12950 0.57 -1.0
2,597,874 - A4249_RS12950 0.57 +0.5
2,598,093 - A4249_RS12950 0.74 +1.1
2,598,093 - A4249_RS12950 0.74 +0.1
2,598,146 + A4249_RS12950 0.78 -0.5
2,598,146 + A4249_RS12950 0.78 +1.2
2,598,147 - A4249_RS12950 0.78 -1.0
2,598,147 - A4249_RS12950 0.78 +0.1
2,598,147 - A4249_RS12950 0.78 +0.5
2,598,147 - A4249_RS12950 0.78 -0.8
2,598,441 + +0.5
2,598,442 - -1.1
2,599,376 - A4249_RS12960 0.11 +0.3

Or see this region's nucleotide sequence