Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12650

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12635 and A4249_RS12640 overlap by 4 nucleotidesA4249_RS12640 and A4249_RS12645 are separated by 93 nucleotidesA4249_RS12645 and A4249_RS12650 are separated by 102 nucleotidesA4249_RS12650 and A4249_RS12655 overlap by 4 nucleotides A4249_RS12635: A4249_RS12635 - phosphatase PAP2 family protein, at 2,536,141 to 2,536,938 _RS12635 A4249_RS12640: A4249_RS12640 - hypothetical protein, at 2,536,935 to 2,537,432 _RS12640 A4249_RS12645: A4249_RS12645 - ribonuclease, at 2,537,526 to 2,537,786 _RS12645 A4249_RS12650: A4249_RS12650 - LLM class flavin-dependent oxidoreductase, at 2,537,889 to 2,538,893 _RS12650 A4249_RS12655: A4249_RS12655 - alpha/beta hydrolase, at 2,538,890 to 2,539,861 _RS12655 Position (kb) 2537 2538 2539Strain fitness (log2 ratio) -2 -1 0 1at 2537.041 kb on + strand, within A4249_RS12640at 2537.111 kb on - strand, within A4249_RS12640at 2537.274 kb on + strand, within A4249_RS12640at 2537.275 kb on - strand, within A4249_RS12640at 2537.528 kb on - strandat 2537.881 kb on + strandat 2537.882 kb on - strandat 2537.882 kb on - strandat 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.997 kb on + strand, within A4249_RS12650at 2537.998 kb on - strand, within A4249_RS12650at 2538.029 kb on + strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.030 kb on - strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.255 kb on + strand, within A4249_RS12650at 2538.256 kb on - strand, within A4249_RS12650at 2538.432 kb on + strand, within A4249_RS12650at 2538.486 kb on + strand, within A4249_RS12650at 2538.487 kb on - strand, within A4249_RS12650at 2538.487 kb on - strand, within A4249_RS12650at 2538.717 kb on + strand, within A4249_RS12650at 2538.717 kb on + strand, within A4249_RS12650at 2538.717 kb on + strand, within A4249_RS12650at 2538.718 kb on - strand, within A4249_RS12650at 2538.718 kb on - strand, within A4249_RS12650at 2538.718 kb on - strand, within A4249_RS12650at 2538.891 kb on + strandat 2538.891 kb on + strandat 2538.892 kb on - strandat 2539.036 kb on - strand, within A4249_RS12655at 2539.188 kb on + strand, within A4249_RS12655at 2539.188 kb on + strand, within A4249_RS12655at 2539.188 kb on + strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.189 kb on - strand, within A4249_RS12655at 2539.314 kb on + strand, within A4249_RS12655at 2539.314 kb on + strand, within A4249_RS12655at 2539.315 kb on - strand, within A4249_RS12655at 2539.315 kb on - strand, within A4249_RS12655at 2539.320 kb on + strand, within A4249_RS12655at 2539.320 kb on + strand, within A4249_RS12655at 2539.320 kb on + strand, within A4249_RS12655at 2539.321 kb on - strand, within A4249_RS12655at 2539.321 kb on - strand, within A4249_RS12655at 2539.321 kb on - strand, within A4249_RS12655at 2539.321 kb on - strand, within A4249_RS12655at 2539.398 kb on + strand, within A4249_RS12655at 2539.398 kb on + strand, within A4249_RS12655at 2539.398 kb on + strand, within A4249_RS12655at 2539.398 kb on + strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.399 kb on - strand, within A4249_RS12655at 2539.638 kb on + strand, within A4249_RS12655at 2539.638 kb on + strand, within A4249_RS12655at 2539.639 kb on - strand, within A4249_RS12655at 2539.639 kb on - strand, within A4249_RS12655at 2539.675 kb on - strand, within A4249_RS12655at 2539.675 kb on - strand, within A4249_RS12655at 2539.704 kb on + strand, within A4249_RS12655at 2539.704 kb on + strand, within A4249_RS12655at 2539.704 kb on + strand, within A4249_RS12655at 2539.705 kb on - strand, within A4249_RS12655at 2539.705 kb on - strand, within A4249_RS12655at 2539.705 kb on - strand, within A4249_RS12655at 2539.846 kb on + strandat 2539.846 kb on + strandat 2539.846 kb on + strandat 2539.847 kb on - strandat 2539.847 kb on - strandat 2539.847 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,537,041 + A4249_RS12640 0.21 +1.0
2,537,111 - A4249_RS12640 0.35 -0.9
2,537,274 + A4249_RS12640 0.68 -0.5
2,537,275 - A4249_RS12640 0.68 +0.7
2,537,528 - +0.1
2,537,881 + -2.7
2,537,882 - +0.4
2,537,882 - +0.1
2,537,997 + A4249_RS12650 0.11 -0.2
2,537,997 + A4249_RS12650 0.11 +1.7
2,537,997 + A4249_RS12650 0.11 +0.2
2,537,997 + A4249_RS12650 0.11 -0.3
2,537,998 - A4249_RS12650 0.11 -0.3
2,538,029 + A4249_RS12650 0.14 -1.0
2,538,030 - A4249_RS12650 0.14 +0.8
2,538,030 - A4249_RS12650 0.14 +0.4
2,538,030 - A4249_RS12650 0.14 +1.1
2,538,030 - A4249_RS12650 0.14 -0.3
2,538,030 - A4249_RS12650 0.14 -0.6
2,538,030 - A4249_RS12650 0.14 +0.1
2,538,255 + A4249_RS12650 0.36 -1.1
2,538,255 + A4249_RS12650 0.36 +0.1
2,538,255 + A4249_RS12650 0.36 -0.5
2,538,256 - A4249_RS12650 0.37 -1.0
2,538,432 + A4249_RS12650 0.54 -0.5
2,538,486 + A4249_RS12650 0.59 +0.5
2,538,487 - A4249_RS12650 0.60 +1.3
2,538,487 - A4249_RS12650 0.60 +0.1
2,538,717 + A4249_RS12650 0.82 +0.3
2,538,717 + A4249_RS12650 0.82 +1.6
2,538,717 + A4249_RS12650 0.82 -0.3
2,538,718 - A4249_RS12650 0.82 -2.2
2,538,718 - A4249_RS12650 0.82 -0.1
2,538,718 - A4249_RS12650 0.82 -0.2
2,538,891 + -0.4
2,538,891 + -0.7
2,538,892 - -0.6
2,539,036 - A4249_RS12655 0.15 -0.7
2,539,188 + A4249_RS12655 0.31 +0.6
2,539,188 + A4249_RS12655 0.31 +0.7
2,539,188 + A4249_RS12655 0.31 -0.0
2,539,189 - A4249_RS12655 0.31 +0.7
2,539,189 - A4249_RS12655 0.31 -2.5
2,539,189 - A4249_RS12655 0.31 -0.3
2,539,189 - A4249_RS12655 0.31 +0.4
2,539,189 - A4249_RS12655 0.31 -2.1
2,539,189 - A4249_RS12655 0.31 +0.1
2,539,314 + A4249_RS12655 0.44 +0.0
2,539,314 + A4249_RS12655 0.44 -0.4
2,539,315 - A4249_RS12655 0.44 -0.7
2,539,315 - A4249_RS12655 0.44 +0.4
2,539,320 + A4249_RS12655 0.44 -1.3
2,539,320 + A4249_RS12655 0.44 +0.0
2,539,320 + A4249_RS12655 0.44 +0.6
2,539,321 - A4249_RS12655 0.44 +0.1
2,539,321 - A4249_RS12655 0.44 +0.0
2,539,321 - A4249_RS12655 0.44 +0.2
2,539,321 - A4249_RS12655 0.44 -0.2
2,539,398 + A4249_RS12655 0.52 +1.1
2,539,398 + A4249_RS12655 0.52 -0.4
2,539,398 + A4249_RS12655 0.52 -0.7
2,539,398 + A4249_RS12655 0.52 -0.1
2,539,399 - A4249_RS12655 0.52 -0.7
2,539,399 - A4249_RS12655 0.52 -0.1
2,539,399 - A4249_RS12655 0.52 -0.3
2,539,399 - A4249_RS12655 0.52 +0.1
2,539,399 - A4249_RS12655 0.52 -0.9
2,539,399 - A4249_RS12655 0.52 +0.1
2,539,399 - A4249_RS12655 0.52 +0.4
2,539,399 - A4249_RS12655 0.52 -0.7
2,539,638 + A4249_RS12655 0.77 +0.7
2,539,638 + A4249_RS12655 0.77 -1.3
2,539,639 - A4249_RS12655 0.77 +0.6
2,539,639 - A4249_RS12655 0.77 +0.4
2,539,675 - A4249_RS12655 0.81 -0.3
2,539,675 - A4249_RS12655 0.81 +0.5
2,539,704 + A4249_RS12655 0.84 -0.8
2,539,704 + A4249_RS12655 0.84 -0.4
2,539,704 + A4249_RS12655 0.84 +1.2
2,539,705 - A4249_RS12655 0.84 -1.0
2,539,705 - A4249_RS12655 0.84 -0.4
2,539,705 - A4249_RS12655 0.84 +0.1
2,539,846 + +0.5
2,539,846 + +0.5
2,539,846 + -0.3
2,539,847 - -0.7
2,539,847 - -0.4
2,539,847 - -0.6

Or see this region's nucleotide sequence