Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS12425

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS12415 and A4249_RS12420 are separated by 191 nucleotidesA4249_RS12420 and A4249_RS12425 are separated by 66 nucleotidesA4249_RS12425 and A4249_RS12430 overlap by 4 nucleotidesA4249_RS12430 and A4249_RS12435 are separated by 24 nucleotides A4249_RS12415: A4249_RS12415 - cation:proton antiporter, at 2,490,513 to 2,492,348 _RS12415 A4249_RS12420: A4249_RS12420 - TetR/AcrR family transcriptional regulator, at 2,492,540 to 2,493,181 _RS12420 A4249_RS12425: A4249_RS12425 - Smr/MutS family protein, at 2,493,248 to 2,493,829 _RS12425 A4249_RS12430: A4249_RS12430 - helix-turn-helix transcriptional regulator, at 2,493,826 to 2,494,065 _RS12430 A4249_RS12435: A4249_RS12435 - DUF2975 domain-containing protein, at 2,494,090 to 2,494,695 _RS12435 Position (kb) 2493 2494Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2492.314 kb on + strandat 2492.314 kb on + strandat 2492.346 kb on + strandat 2492.347 kb on - strandat 2492.360 kb on + strandat 2492.360 kb on + strandat 2492.360 kb on + strandat 2492.361 kb on - strandat 2492.361 kb on - strandat 2492.472 kb on + strandat 2492.472 kb on + strandat 2492.473 kb on - strandat 2492.473 kb on - strandat 2492.473 kb on - strandat 2492.521 kb on - strandat 2492.537 kb on + strandat 2492.537 kb on + strandat 2492.538 kb on - strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.539 kb on + strandat 2492.540 kb on - strandat 2492.548 kb on + strandat 2492.549 kb on - strandat 2492.660 kb on + strand, within A4249_RS12420at 2492.661 kb on - strand, within A4249_RS12420at 2492.661 kb on - strand, within A4249_RS12420at 2492.773 kb on + strand, within A4249_RS12420at 2492.773 kb on + strand, within A4249_RS12420at 2492.774 kb on - strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.068 kb on + strand, within A4249_RS12420at 2493.069 kb on - strand, within A4249_RS12420at 2493.095 kb on + strand, within A4249_RS12420at 2493.096 kb on - strand, within A4249_RS12420at 2493.130 kb on + strandat 2493.131 kb on - strandat 2493.179 kb on + strandat 2493.179 kb on + strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.180 kb on - strandat 2493.249 kb on + strandat 2493.249 kb on + strandat 2493.249 kb on + strandat 2493.250 kb on - strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.273 kb on + strandat 2493.274 kb on - strandat 2493.274 kb on - strandat 2493.274 kb on - strandat 2493.274 kb on - strandat 2493.680 kb on + strand, within A4249_RS12425at 2493.680 kb on + strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2493.681 kb on - strand, within A4249_RS12425at 2494.076 kb on + strandat 2494.077 kb on - strandat 2494.077 kb on - strandat 2494.161 kb on + strand, within A4249_RS12435at 2494.162 kb on - strand, within A4249_RS12435at 2494.162 kb on - strand, within A4249_RS12435at 2494.162 kb on - strand, within A4249_RS12435at 2494.162 kb on - strand, within A4249_RS12435at 2494.162 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.563 kb on - strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.588 kb on + strand, within A4249_RS12435at 2494.589 kb on - strand, within A4249_RS12435at 2494.589 kb on - strand, within A4249_RS12435at 2494.768 kb on + strandat 2494.768 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.770 kb on + strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strandat 2494.771 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,492,314 + +1.1
2,492,314 + +1.0
2,492,346 + -0.3
2,492,347 - -1.0
2,492,360 + -0.2
2,492,360 + -0.2
2,492,360 + +0.1
2,492,361 - +0.3
2,492,361 - +0.4
2,492,472 + +0.2
2,492,472 + +0.0
2,492,473 - -0.5
2,492,473 - -0.2
2,492,473 - -0.3
2,492,521 - +1.0
2,492,537 + +1.1
2,492,537 + +0.7
2,492,538 - -1.4
2,492,539 + +0.9
2,492,539 + +0.2
2,492,539 + +0.1
2,492,539 + -0.8
2,492,540 - -1.2
2,492,548 + +0.3
2,492,549 - +0.6
2,492,660 + A4249_RS12420 0.19 -0.1
2,492,661 - A4249_RS12420 0.19 -0.9
2,492,661 - A4249_RS12420 0.19 +1.6
2,492,773 + A4249_RS12420 0.36 +0.7
2,492,773 + A4249_RS12420 0.36 -0.5
2,492,774 - A4249_RS12420 0.36 +0.2
2,493,068 + A4249_RS12420 0.82 -0.4
2,493,068 + A4249_RS12420 0.82 -0.8
2,493,068 + A4249_RS12420 0.82 -0.1
2,493,069 - A4249_RS12420 0.82 -0.7
2,493,095 + A4249_RS12420 0.86 -0.4
2,493,096 - A4249_RS12420 0.87 +1.2
2,493,130 + +0.5
2,493,131 - +0.7
2,493,179 + -0.5
2,493,179 + -0.3
2,493,180 - -0.0
2,493,180 - +0.1
2,493,180 - +0.3
2,493,180 - +0.2
2,493,249 + +0.5
2,493,249 + +2.1
2,493,249 + +0.1
2,493,250 - -0.8
2,493,273 + -0.9
2,493,273 + -0.0
2,493,273 + -0.4
2,493,273 + -0.3
2,493,273 + -1.3
2,493,273 + -0.1
2,493,273 + -0.3
2,493,273 + -2.2
2,493,273 + +0.7
2,493,273 + +0.4
2,493,273 + +0.1
2,493,274 - -2.1
2,493,274 - +0.3
2,493,274 - +0.6
2,493,274 - +0.7
2,493,680 + A4249_RS12425 0.74 +1.2
2,493,680 + A4249_RS12425 0.74 -1.2
2,493,681 - A4249_RS12425 0.74 -0.2
2,493,681 - A4249_RS12425 0.74 +0.9
2,493,681 - A4249_RS12425 0.74 -0.6
2,493,681 - A4249_RS12425 0.74 -1.2
2,493,681 - A4249_RS12425 0.74 -2.4
2,493,681 - A4249_RS12425 0.74 -1.1
2,494,076 + +0.3
2,494,077 - -0.3
2,494,077 - -2.0
2,494,161 + A4249_RS12435 0.12 +2.9
2,494,162 - A4249_RS12435 0.12 -0.9
2,494,162 - A4249_RS12435 0.12 -0.4
2,494,162 - A4249_RS12435 0.12 +0.1
2,494,162 - A4249_RS12435 0.12 +0.8
2,494,162 - A4249_RS12435 0.12 +0.3
2,494,563 - A4249_RS12435 0.78 +1.9
2,494,563 - A4249_RS12435 0.78 +0.9
2,494,563 - A4249_RS12435 0.78 +0.8
2,494,563 - A4249_RS12435 0.78 +2.3
2,494,563 - A4249_RS12435 0.78 +1.1
2,494,563 - A4249_RS12435 0.78 +0.7
2,494,588 + A4249_RS12435 0.82 -0.0
2,494,588 + A4249_RS12435 0.82 -0.3
2,494,588 + A4249_RS12435 0.82 -0.4
2,494,588 + A4249_RS12435 0.82 -0.6
2,494,588 + A4249_RS12435 0.82 +0.9
2,494,588 + A4249_RS12435 0.82 -0.1
2,494,588 + A4249_RS12435 0.82 -0.4
2,494,588 + A4249_RS12435 0.82 -0.0
2,494,589 - A4249_RS12435 0.82 -0.8
2,494,589 - A4249_RS12435 0.82 +0.6
2,494,768 + +0.3
2,494,768 + +0.1
2,494,770 + -0.8
2,494,770 + -0.4
2,494,770 + -0.4
2,494,770 + -1.4
2,494,770 + -1.0
2,494,770 + +0.3
2,494,770 + +0.3
2,494,771 - +0.7
2,494,771 - +0.1
2,494,771 - +0.1
2,494,771 - +1.4
2,494,771 - -0.6
2,494,771 - +0.6
2,494,771 - -1.1
2,494,771 - +0.9
2,494,771 - -1.2
2,494,771 - -0.7
2,494,771 - -0.0
2,494,771 - +0.2
2,494,771 - -0.7
2,494,771 - -1.4

Or see this region's nucleotide sequence