Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10785

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10775 and A4249_RS10780 are separated by 14 nucleotidesA4249_RS10780 and A4249_RS10785 overlap by 4 nucleotidesA4249_RS10785 and A4249_RS10790 overlap by 4 nucleotidesA4249_RS10790 and A4249_RS16965 are separated by 65 nucleotides A4249_RS10775: A4249_RS10775 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 2,164,324 to 2,165,004 _RS10775 A4249_RS10780: A4249_RS10780 - periplasmic heavy metal sensor, at 2,165,019 to 2,165,531 _RS10780 A4249_RS10785: A4249_RS10785 - hypothetical protein, at 2,165,528 to 2,165,929 _RS10785 A4249_RS10790: A4249_RS10790 - RNA polymerase sigma factor, at 2,165,926 to 2,166,498 _RS10790 A4249_RS16965: A4249_RS16965 - hypothetical protein, at 2,166,564 to 2,166,968 _RS16965 Position (kb) 2165 2166Strain fitness (log2 ratio) -2 -1 0 1 2at 2165.453 kb on - strand, within A4249_RS10780at 2165.676 kb on + strand, within A4249_RS10785at 2165.676 kb on + strand, within A4249_RS10785at 2165.677 kb on - strand, within A4249_RS10785at 2165.943 kb on + strandat 2165.943 kb on + strandat 2165.943 kb on + strandat 2165.944 kb on - strandat 2165.944 kb on - strandat 2165.944 kb on - strandat 2165.944 kb on - strandat 2166.022 kb on + strand, within A4249_RS10790at 2166.022 kb on + strand, within A4249_RS10790at 2166.023 kb on - strand, within A4249_RS10790at 2166.023 kb on - strand, within A4249_RS10790at 2166.023 kb on - strand, within A4249_RS10790at 2166.055 kb on - strand, within A4249_RS10790at 2166.072 kb on - strand, within A4249_RS10790at 2166.242 kb on + strand, within A4249_RS10790at 2166.242 kb on + strand, within A4249_RS10790at 2166.242 kb on + strand, within A4249_RS10790at 2166.243 kb on - strand, within A4249_RS10790at 2166.565 kb on + strandat 2166.565 kb on + strandat 2166.565 kb on + strandat 2166.565 kb on + strandat 2166.565 kb on + strandat 2166.566 kb on - strandat 2166.566 kb on - strandat 2166.600 kb on + strandat 2166.601 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,165,453 - A4249_RS10780 0.85 +1.7
2,165,676 + A4249_RS10785 0.37 -0.4
2,165,676 + A4249_RS10785 0.37 -0.8
2,165,677 - A4249_RS10785 0.37 -1.0
2,165,943 + +0.5
2,165,943 + -0.6
2,165,943 + +1.9
2,165,944 - -1.3
2,165,944 - +0.2
2,165,944 - -0.1
2,165,944 - +1.4
2,166,022 + A4249_RS10790 0.17 -0.7
2,166,022 + A4249_RS10790 0.17 +1.2
2,166,023 - A4249_RS10790 0.17 +0.5
2,166,023 - A4249_RS10790 0.17 -0.7
2,166,023 - A4249_RS10790 0.17 -0.2
2,166,055 - A4249_RS10790 0.23 +1.2
2,166,072 - A4249_RS10790 0.25 -0.1
2,166,242 + A4249_RS10790 0.55 -0.9
2,166,242 + A4249_RS10790 0.55 -0.8
2,166,242 + A4249_RS10790 0.55 +0.2
2,166,243 - A4249_RS10790 0.55 -0.1
2,166,565 + -0.4
2,166,565 + -0.6
2,166,565 + -0.3
2,166,565 + -1.5
2,166,565 + -1.9
2,166,566 - -0.1
2,166,566 - +0.6
2,166,600 + -0.2
2,166,601 - -1.2

Or see this region's nucleotide sequence