Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS10125

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS10115 and A4249_RS16335 overlap by 11 nucleotidesA4249_RS16335 and A4249_RS10120 overlap by 4 nucleotidesA4249_RS10120 and A4249_RS10125 overlap by 4 nucleotidesA4249_RS10125 and A4249_RS10130 overlap by 4 nucleotidesA4249_RS10130 and A4249_RS10135 overlap by 4 nucleotidesA4249_RS10135 and A4249_RS10140 overlap by 4 nucleotides A4249_RS10115: A4249_RS10115 - phage tail tape measure protein, at 2,033,022 to 2,033,546 _RS10115 A4249_RS16335: A4249_RS16335 - phage tail assembly chaperone, at 2,033,536 to 2,033,712 _RS16335 A4249_RS10120: A4249_RS10120 - GTA-gp10 family protein, at 2,033,709 to 2,033,987 _RS10120 A4249_RS10125: A4249_RS10125 - phage major tail protein, TP901-1 family, at 2,033,984 to 2,034,394 _RS10125 A4249_RS10130: A4249_RS10130 - DUF3168 domain-containing protein, at 2,034,391 to 2,034,804 _RS10130 A4249_RS10135: A4249_RS10135 - phage head-tail adapter protein, at 2,034,801 to 2,035,097 _RS10135 A4249_RS10140: A4249_RS10140 - head-tail connector protein, at 2,035,094 to 2,035,357 _RS10140 Position (kb) 2033 2034 2035Strain fitness (log2 ratio) -1 0 1at 2033.209 kb on + strand, within A4249_RS10115at 2033.209 kb on + strand, within A4249_RS10115at 2033.210 kb on - strand, within A4249_RS10115at 2033.389 kb on - strand, within A4249_RS10115at 2034.063 kb on + strand, within A4249_RS10125at 2034.063 kb on + strand, within A4249_RS10125at 2034.064 kb on - strand, within A4249_RS10125at 2034.334 kb on + strand, within A4249_RS10125at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.443 kb on + strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.444 kb on - strand, within A4249_RS10130at 2034.680 kb on + strand, within A4249_RS10130at 2034.680 kb on + strand, within A4249_RS10130at 2034.681 kb on - strand, within A4249_RS10130at 2034.681 kb on - strand, within A4249_RS10130at 2034.681 kb on - strand, within A4249_RS10130at 2034.714 kb on - strand, within A4249_RS10130at 2034.889 kb on - strand, within A4249_RS10135at 2034.938 kb on + strand, within A4249_RS10135at 2034.938 kb on + strand, within A4249_RS10135at 2034.938 kb on + strand, within A4249_RS10135at 2034.938 kb on + strand, within A4249_RS10135at 2034.939 kb on - strand, within A4249_RS10135at 2034.939 kb on - strand, within A4249_RS10135at 2035.113 kb on + strandat 2035.168 kb on - strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.286 kb on + strand, within A4249_RS10140at 2035.287 kb on - strand, within A4249_RS10140at 2035.287 kb on - strand, within A4249_RS10140at 2035.287 kb on - strand, within A4249_RS10140at 2035.287 kb on - strand, within A4249_RS10140at 2035.287 kb on - strand, within A4249_RS10140

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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2,033,209 + A4249_RS10115 0.36 -0.5
2,033,209 + A4249_RS10115 0.36 -0.8
2,033,210 - A4249_RS10115 0.36 -0.4
2,033,389 - A4249_RS10115 0.70 -0.6
2,034,063 + A4249_RS10125 0.19 +0.7
2,034,063 + A4249_RS10125 0.19 -0.6
2,034,064 - A4249_RS10125 0.19 -0.7
2,034,334 + A4249_RS10125 0.85 -0.9
2,034,443 + A4249_RS10130 0.13 -0.6
2,034,443 + A4249_RS10130 0.13 -0.8
2,034,443 + A4249_RS10130 0.13 +0.7
2,034,443 + A4249_RS10130 0.13 +0.6
2,034,443 + A4249_RS10130 0.13 -0.1
2,034,443 + A4249_RS10130 0.13 -0.2
2,034,444 - A4249_RS10130 0.13 +0.3
2,034,444 - A4249_RS10130 0.13 -0.0
2,034,444 - A4249_RS10130 0.13 +0.8
2,034,444 - A4249_RS10130 0.13 -0.4
2,034,444 - A4249_RS10130 0.13 +0.3
2,034,680 + A4249_RS10130 0.70 +0.5
2,034,680 + A4249_RS10130 0.70 +0.2
2,034,681 - A4249_RS10130 0.70 -1.0
2,034,681 - A4249_RS10130 0.70 +0.3
2,034,681 - A4249_RS10130 0.70 +0.9
2,034,714 - A4249_RS10130 0.78 -1.1
2,034,889 - A4249_RS10135 0.30 -1.2
2,034,938 + A4249_RS10135 0.46 +0.4
2,034,938 + A4249_RS10135 0.46 -0.8
2,034,938 + A4249_RS10135 0.46 +0.2
2,034,938 + A4249_RS10135 0.46 +0.9
2,034,939 - A4249_RS10135 0.46 -1.0
2,034,939 - A4249_RS10135 0.46 -0.1
2,035,113 + -1.4
2,035,168 - A4249_RS10140 0.28 -0.2
2,035,286 + A4249_RS10140 0.73 -0.2
2,035,286 + A4249_RS10140 0.73 -0.9
2,035,286 + A4249_RS10140 0.73 -1.3
2,035,286 + A4249_RS10140 0.73 +0.6
2,035,286 + A4249_RS10140 0.73 -0.2
2,035,286 + A4249_RS10140 0.73 +0.2
2,035,287 - A4249_RS10140 0.73 -0.2
2,035,287 - A4249_RS10140 0.73 -0.8
2,035,287 - A4249_RS10140 0.73 +0.2
2,035,287 - A4249_RS10140 0.73 -0.0
2,035,287 - A4249_RS10140 0.73 +0.6

Or see this region's nucleotide sequence