Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS07015

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS07005 and A4249_RS07010 overlap by 4 nucleotidesA4249_RS07010 and A4249_RS07015 are separated by 80 nucleotidesA4249_RS07015 and A4249_RS07020 overlap by 4 nucleotidesA4249_RS07020 and A4249_RS07025 overlap by 4 nucleotidesA4249_RS07025 and A4249_RS07030 overlap by 4 nucleotides A4249_RS07005: A4249_RS07005 - YqaJ viral recombinase family protein, at 1,413,258 to 1,413,893 _RS07005 A4249_RS07010: A4249_RS07010 - ERF family protein, at 1,413,890 to 1,414,609 _RS07010 A4249_RS07015: A4249_RS07015 - hypothetical protein, at 1,414,690 to 1,414,935 _RS07015 A4249_RS07020: A4249_RS07020 - hypothetical protein, at 1,414,932 to 1,415,246 _RS07020 A4249_RS07025: A4249_RS07025 - hypothetical protein, at 1,415,243 to 1,415,491 _RS07025 A4249_RS07030: A4249_RS07030 - hypothetical protein, at 1,415,488 to 1,415,895 _RS07030 Position (kb) 1414 1415Strain fitness (log2 ratio) -2 -1 0 1 2at 1413.775 kb on + strand, within A4249_RS07005at 1413.775 kb on + strand, within A4249_RS07005at 1413.775 kb on + strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.776 kb on - strand, within A4249_RS07005at 1413.927 kb on + strandat 1413.927 kb on + strandat 1413.927 kb on + strandat 1413.928 kb on - strandat 1414.040 kb on - strand, within A4249_RS07010at 1414.137 kb on + strand, within A4249_RS07010at 1414.138 kb on - strand, within A4249_RS07010at 1414.138 kb on - strand, within A4249_RS07010at 1414.149 kb on + strand, within A4249_RS07010at 1414.149 kb on + strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.150 kb on - strand, within A4249_RS07010at 1414.299 kb on + strand, within A4249_RS07010at 1414.299 kb on + strand, within A4249_RS07010at 1414.345 kb on - strand, within A4249_RS07010at 1414.362 kb on + strand, within A4249_RS07010at 1414.362 kb on + strand, within A4249_RS07010at 1414.363 kb on - strand, within A4249_RS07010at 1414.363 kb on - strand, within A4249_RS07010at 1414.860 kb on + strand, within A4249_RS07015at 1414.860 kb on + strand, within A4249_RS07015at 1414.860 kb on + strand, within A4249_RS07015at 1414.861 kb on - strand, within A4249_RS07015at 1414.861 kb on - strand, within A4249_RS07015at 1415.206 kb on - strand, within A4249_RS07020at 1415.206 kb on - strand, within A4249_RS07020at 1415.206 kb on - strand, within A4249_RS07020at 1415.265 kb on + strandat 1415.265 kb on + strandat 1415.265 kb on + strandat 1415.331 kb on + strand, within A4249_RS07025at 1415.331 kb on + strand, within A4249_RS07025at 1415.331 kb on + strand, within A4249_RS07025at 1415.331 kb on + strand, within A4249_RS07025at 1415.332 kb on - strand, within A4249_RS07025at 1415.332 kb on - strand, within A4249_RS07025at 1415.332 kb on - strand, within A4249_RS07025at 1415.332 kb on - strand, within A4249_RS07025at 1415.346 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.403 kb on + strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.404 kb on - strand, within A4249_RS07025at 1415.432 kb on + strand, within A4249_RS07025at 1415.511 kb on + strandat 1415.511 kb on + strandat 1415.511 kb on + strandat 1415.511 kb on + strandat 1415.512 kb on - strandat 1415.512 kb on - strandat 1415.585 kb on + strand, within A4249_RS07030at 1415.585 kb on + strand, within A4249_RS07030at 1415.585 kb on + strand, within A4249_RS07030at 1415.625 kb on - strand, within A4249_RS07030at 1415.625 kb on - strand, within A4249_RS07030at 1415.625 kb on - strand, within A4249_RS07030at 1415.672 kb on + strand, within A4249_RS07030at 1415.673 kb on - strand, within A4249_RS07030

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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1,413,775 + A4249_RS07005 0.81 +0.6
1,413,775 + A4249_RS07005 0.81 -0.7
1,413,775 + A4249_RS07005 0.81 -0.3
1,413,776 - A4249_RS07005 0.81 -0.2
1,413,776 - A4249_RS07005 0.81 -0.0
1,413,776 - A4249_RS07005 0.81 -0.6
1,413,927 + -0.4
1,413,927 + -1.5
1,413,927 + +0.4
1,413,928 - +0.2
1,414,040 - A4249_RS07010 0.21 -0.6
1,414,137 + A4249_RS07010 0.34 +0.3
1,414,138 - A4249_RS07010 0.34 +0.0
1,414,138 - A4249_RS07010 0.34 +0.0
1,414,149 + A4249_RS07010 0.36 -0.7
1,414,149 + A4249_RS07010 0.36 +0.4
1,414,150 - A4249_RS07010 0.36 +2.5
1,414,150 - A4249_RS07010 0.36 +1.0
1,414,150 - A4249_RS07010 0.36 -0.1
1,414,299 + A4249_RS07010 0.57 +0.1
1,414,299 + A4249_RS07010 0.57 -0.0
1,414,345 - A4249_RS07010 0.63 -1.8
1,414,362 + A4249_RS07010 0.66 -0.0
1,414,362 + A4249_RS07010 0.66 -0.3
1,414,363 - A4249_RS07010 0.66 -0.4
1,414,363 - A4249_RS07010 0.66 +0.7
1,414,860 + A4249_RS07015 0.69 -0.5
1,414,860 + A4249_RS07015 0.69 +0.5
1,414,860 + A4249_RS07015 0.69 -0.5
1,414,861 - A4249_RS07015 0.70 -1.0
1,414,861 - A4249_RS07015 0.70 +0.5
1,415,206 - A4249_RS07020 0.87 +0.6
1,415,206 - A4249_RS07020 0.87 +0.2
1,415,206 - A4249_RS07020 0.87 -0.2
1,415,265 + -0.0
1,415,265 + -0.1
1,415,265 + -1.0
1,415,331 + A4249_RS07025 0.35 -0.1
1,415,331 + A4249_RS07025 0.35 +0.4
1,415,331 + A4249_RS07025 0.35 +0.5
1,415,331 + A4249_RS07025 0.35 +0.2
1,415,332 - A4249_RS07025 0.36 +0.5
1,415,332 - A4249_RS07025 0.36 -0.2
1,415,332 - A4249_RS07025 0.36 +0.2
1,415,332 - A4249_RS07025 0.36 -0.3
1,415,346 + A4249_RS07025 0.41 +1.6
1,415,403 + A4249_RS07025 0.64 +0.9
1,415,403 + A4249_RS07025 0.64 +0.3
1,415,403 + A4249_RS07025 0.64 -1.1
1,415,403 + A4249_RS07025 0.64 -0.4
1,415,403 + A4249_RS07025 0.64 -1.0
1,415,403 + A4249_RS07025 0.64 +0.0
1,415,404 - A4249_RS07025 0.65 +0.3
1,415,404 - A4249_RS07025 0.65 +0.4
1,415,404 - A4249_RS07025 0.65 -0.1
1,415,404 - A4249_RS07025 0.65 +1.1
1,415,404 - A4249_RS07025 0.65 +0.3
1,415,404 - A4249_RS07025 0.65 +0.0
1,415,404 - A4249_RS07025 0.65 +0.5
1,415,404 - A4249_RS07025 0.65 +0.5
1,415,432 + A4249_RS07025 0.76 -0.2
1,415,511 + +0.0
1,415,511 + -1.4
1,415,511 + +0.9
1,415,511 + +1.4
1,415,512 - +0.6
1,415,512 - +1.3
1,415,585 + A4249_RS07030 0.24 +0.3
1,415,585 + A4249_RS07030 0.24 +0.5
1,415,585 + A4249_RS07030 0.24 -0.5
1,415,625 - A4249_RS07030 0.34 -0.6
1,415,625 - A4249_RS07030 0.34 +2.0
1,415,625 - A4249_RS07030 0.34 -0.5
1,415,672 + A4249_RS07030 0.45 -0.3
1,415,673 - A4249_RS07030 0.45 +0.0

Or see this region's nucleotide sequence