Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS02345

Experiment: Inosine 0.3728 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntA4249_RS02340 and A4249_RS02345 are separated by 137 nucleotidesA4249_RS02345 and A4249_RS02350 overlap by 4 nucleotides A4249_RS02340: A4249_RS02340 - helicase-related protein, at 493,716 to 497,021 _RS02340 A4249_RS02345: A4249_RS02345 - alpha/beta hydrolase, at 497,159 to 498,517 _RS02345 A4249_RS02350: A4249_RS02350 - GMC family oxidoreductase, at 498,514 to 500,058 _RS02350 Position (kb) 497 498 499Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.223 kb on + strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.224 kb on - strand, within A4249_RS02340at 496.259 kb on + strand, within A4249_RS02340at 496.259 kb on + strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.260 kb on - strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.353 kb on + strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.354 kb on - strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.537 kb on + strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.538 kb on - strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.539 kb on + strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.540 kb on - strand, within A4249_RS02340at 496.573 kb on + strand, within A4249_RS02340at 496.573 kb on + strand, within A4249_RS02340at 496.574 kb on - strand, within A4249_RS02340at 496.574 kb on - strand, within A4249_RS02340at 496.612 kb on + strand, within A4249_RS02340at 496.612 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.647 kb on + strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.648 kb on - strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.680 kb on + strand, within A4249_RS02340at 496.681 kb on - strand, within A4249_RS02340at 497.209 kb on + strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.210 kb on - strandat 497.309 kb on + strand, within A4249_RS02345at 497.454 kb on + strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.455 kb on - strand, within A4249_RS02345at 497.534 kb on - strand, within A4249_RS02345at 497.599 kb on + strand, within A4249_RS02345at 497.600 kb on - strand, within A4249_RS02345at 497.813 kb on + strand, within A4249_RS02345at 497.898 kb on + strand, within A4249_RS02345at 497.899 kb on - strand, within A4249_RS02345at 498.455 kb on + strandat 498.455 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.663 kb on + strandat 498.664 kb on - strandat 498.664 kb on - strandat 498.664 kb on - strandat 498.664 kb on - strandat 498.664 kb on - strandat 498.664 kb on - strandat 498.691 kb on + strand, within A4249_RS02350at 498.691 kb on + strand, within A4249_RS02350at 498.691 kb on + strand, within A4249_RS02350at 498.692 kb on - strand, within A4249_RS02350at 498.692 kb on - strand, within A4249_RS02350at 498.692 kb on - strand, within A4249_RS02350at 498.886 kb on + strand, within A4249_RS02350at 498.886 kb on + strand, within A4249_RS02350at 498.886 kb on + strand, within A4249_RS02350at 498.886 kb on + strand, within A4249_RS02350at 498.887 kb on - strand, within A4249_RS02350at 498.887 kb on - strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.899 kb on + strand, within A4249_RS02350at 498.900 kb on - strand, within A4249_RS02350at 498.900 kb on - strand, within A4249_RS02350at 498.900 kb on - strand, within A4249_RS02350at 498.900 kb on - strand, within A4249_RS02350at 498.900 kb on - strand, within A4249_RS02350at 498.934 kb on + strand, within A4249_RS02350at 498.934 kb on + strand, within A4249_RS02350at 498.934 kb on + strand, within A4249_RS02350at 498.961 kb on + strand, within A4249_RS02350at 498.961 kb on + strand, within A4249_RS02350at 498.962 kb on - strand, within A4249_RS02350at 499.032 kb on + strand, within A4249_RS02350at 499.221 kb on - strand, within A4249_RS02350at 499.264 kb on + strand, within A4249_RS02350at 499.264 kb on + strand, within A4249_RS02350at 499.264 kb on + strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.265 kb on - strand, within A4249_RS02350at 499.361 kb on + strand, within A4249_RS02350at 499.361 kb on + strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.362 kb on - strand, within A4249_RS02350at 499.440 kb on + strand, within A4249_RS02350at 499.440 kb on + strand, within A4249_RS02350at 499.440 kb on + strand, within A4249_RS02350at 499.440 kb on + strand, within A4249_RS02350at 499.441 kb on - strand, within A4249_RS02350at 499.441 kb on - strand, within A4249_RS02350at 499.441 kb on - strand, within A4249_RS02350at 499.441 kb on - strand, within A4249_RS02350at 499.441 kb on - strand, within A4249_RS02350at 499.472 kb on + strand, within A4249_RS02350at 499.473 kb on - strand, within A4249_RS02350at 499.473 kb on - strand, within A4249_RS02350

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
remove
496,223 + A4249_RS02340 0.76 +0.4
496,223 + A4249_RS02340 0.76 +0.5
496,223 + A4249_RS02340 0.76 +0.3
496,223 + A4249_RS02340 0.76 -0.6
496,223 + A4249_RS02340 0.76 -3.4
496,224 - A4249_RS02340 0.76 +0.1
496,224 - A4249_RS02340 0.76 +1.1
496,224 - A4249_RS02340 0.76 +0.4
496,224 - A4249_RS02340 0.76 +0.3
496,224 - A4249_RS02340 0.76 +0.6
496,259 + A4249_RS02340 0.77 -0.1
496,259 + A4249_RS02340 0.77 -0.3
496,260 - A4249_RS02340 0.77 +1.2
496,260 - A4249_RS02340 0.77 -0.6
496,260 - A4249_RS02340 0.77 +0.5
496,353 + A4249_RS02340 0.80 +0.9
496,353 + A4249_RS02340 0.80 +2.1
496,353 + A4249_RS02340 0.80 -0.6
496,354 - A4249_RS02340 0.80 -1.0
496,354 - A4249_RS02340 0.80 -1.3
496,354 - A4249_RS02340 0.80 +0.1
496,354 - A4249_RS02340 0.80 -1.4
496,537 + A4249_RS02340 0.85 +1.6
496,537 + A4249_RS02340 0.85 +0.9
496,537 + A4249_RS02340 0.85 -0.2
496,537 + A4249_RS02340 0.85 -0.0
496,537 + A4249_RS02340 0.85 -0.5
496,537 + A4249_RS02340 0.85 +0.3
496,537 + A4249_RS02340 0.85 -0.6
496,538 - A4249_RS02340 0.85 +0.1
496,538 - A4249_RS02340 0.85 +0.1
496,538 - A4249_RS02340 0.85 +0.5
496,538 - A4249_RS02340 0.85 +0.7
496,539 + A4249_RS02340 0.85 -1.5
496,539 + A4249_RS02340 0.85 -0.3
496,539 + A4249_RS02340 0.85 +0.2
496,539 + A4249_RS02340 0.85 -0.3
496,539 + A4249_RS02340 0.85 -0.2
496,540 - A4249_RS02340 0.85 -1.8
496,540 - A4249_RS02340 0.85 -1.2
496,540 - A4249_RS02340 0.85 -0.8
496,540 - A4249_RS02340 0.85 -0.1
496,540 - A4249_RS02340 0.85 +0.3
496,540 - A4249_RS02340 0.85 -1.6
496,573 + A4249_RS02340 0.86 +0.2
496,573 + A4249_RS02340 0.86 -0.1
496,574 - A4249_RS02340 0.86 -0.5
496,574 - A4249_RS02340 0.86 -0.4
496,612 + A4249_RS02340 0.88 +0.9
496,612 + A4249_RS02340 0.88 -0.3
496,647 + A4249_RS02340 0.89 -0.7
496,647 + A4249_RS02340 0.89 +0.4
496,647 + A4249_RS02340 0.89 -0.2
496,647 + A4249_RS02340 0.89 -1.8
496,647 + A4249_RS02340 0.89 -0.8
496,647 + A4249_RS02340 0.89 -1.4
496,647 + A4249_RS02340 0.89 -0.2
496,647 + A4249_RS02340 0.89 -0.3
496,648 - A4249_RS02340 0.89 +1.0
496,648 - A4249_RS02340 0.89 +0.8
496,648 - A4249_RS02340 0.89 -0.4
496,648 - A4249_RS02340 0.89 +1.5
496,648 - A4249_RS02340 0.89 -1.3
496,648 - A4249_RS02340 0.89 +0.2
496,648 - A4249_RS02340 0.89 -0.2
496,648 - A4249_RS02340 0.89 +1.8
496,648 - A4249_RS02340 0.89 +0.7
496,648 - A4249_RS02340 0.89 +0.7
496,680 + A4249_RS02340 0.90 -0.3
496,680 + A4249_RS02340 0.90 -0.5
496,680 + A4249_RS02340 0.90 -1.1
496,681 - A4249_RS02340 0.90 +1.4
497,209 + +0.2
497,210 - +0.9
497,210 - +1.3
497,210 - +0.1
497,210 - -0.4
497,309 + A4249_RS02345 0.11 +0.6
497,454 + A4249_RS02345 0.22 -0.2
497,455 - A4249_RS02345 0.22 +0.5
497,455 - A4249_RS02345 0.22 -0.1
497,455 - A4249_RS02345 0.22 +0.8
497,455 - A4249_RS02345 0.22 -0.2
497,455 - A4249_RS02345 0.22 -1.0
497,534 - A4249_RS02345 0.28 -0.5
497,599 + A4249_RS02345 0.32 -0.8
497,600 - A4249_RS02345 0.32 -0.1
497,813 + A4249_RS02345 0.48 -0.3
497,898 + A4249_RS02345 0.54 -1.3
497,899 - A4249_RS02345 0.54 -0.3
498,455 + -0.5
498,455 + +1.4
498,663 + +0.5
498,663 + +0.0
498,663 + -1.5
498,663 + -0.5
498,663 + +0.4
498,663 + -2.1
498,663 + -0.7
498,664 - -0.1
498,664 - +1.0
498,664 - +0.1
498,664 - +1.7
498,664 - -0.7
498,664 - +0.1
498,691 + A4249_RS02350 0.11 -0.0
498,691 + A4249_RS02350 0.11 +0.5
498,691 + A4249_RS02350 0.11 +0.3
498,692 - A4249_RS02350 0.12 -0.8
498,692 - A4249_RS02350 0.12 +0.2
498,692 - A4249_RS02350 0.12 -0.6
498,886 + A4249_RS02350 0.24 -0.8
498,886 + A4249_RS02350 0.24 +0.4
498,886 + A4249_RS02350 0.24 +0.5
498,886 + A4249_RS02350 0.24 +1.3
498,887 - A4249_RS02350 0.24 +0.1
498,887 - A4249_RS02350 0.24 -1.7
498,899 + A4249_RS02350 0.25 -1.1
498,899 + A4249_RS02350 0.25 -0.0
498,899 + A4249_RS02350 0.25 -0.1
498,899 + A4249_RS02350 0.25 +0.4
498,899 + A4249_RS02350 0.25 +1.0
498,899 + A4249_RS02350 0.25 +0.2
498,900 - A4249_RS02350 0.25 -0.9
498,900 - A4249_RS02350 0.25 -0.7
498,900 - A4249_RS02350 0.25 -0.7
498,900 - A4249_RS02350 0.25 +0.4
498,900 - A4249_RS02350 0.25 -0.6
498,934 + A4249_RS02350 0.27 +0.5
498,934 + A4249_RS02350 0.27 -0.2
498,934 + A4249_RS02350 0.27 -0.7
498,961 + A4249_RS02350 0.29 -1.0
498,961 + A4249_RS02350 0.29 -0.7
498,962 - A4249_RS02350 0.29 -0.6
499,032 + A4249_RS02350 0.34 -0.1
499,221 - A4249_RS02350 0.46 -0.2
499,264 + A4249_RS02350 0.49 -0.6
499,264 + A4249_RS02350 0.49 -0.9
499,264 + A4249_RS02350 0.49 +0.1
499,265 - A4249_RS02350 0.49 -0.5
499,265 - A4249_RS02350 0.49 +0.3
499,265 - A4249_RS02350 0.49 -0.1
499,265 - A4249_RS02350 0.49 +0.8
499,265 - A4249_RS02350 0.49 -1.0
499,265 - A4249_RS02350 0.49 +0.8
499,361 + A4249_RS02350 0.55 -1.2
499,361 + A4249_RS02350 0.55 -0.2
499,362 - A4249_RS02350 0.55 +0.6
499,362 - A4249_RS02350 0.55 -1.3
499,362 - A4249_RS02350 0.55 +0.8
499,362 - A4249_RS02350 0.55 +0.1
499,362 - A4249_RS02350 0.55 +0.5
499,362 - A4249_RS02350 0.55 +0.5
499,362 - A4249_RS02350 0.55 +0.3
499,440 + A4249_RS02350 0.60 +0.3
499,440 + A4249_RS02350 0.60 -0.3
499,440 + A4249_RS02350 0.60 -0.0
499,440 + A4249_RS02350 0.60 -0.2
499,441 - A4249_RS02350 0.60 -0.0
499,441 - A4249_RS02350 0.60 -0.3
499,441 - A4249_RS02350 0.60 -1.2
499,441 - A4249_RS02350 0.60 -0.0
499,441 - A4249_RS02350 0.60 -0.2
499,472 + A4249_RS02350 0.62 -0.2
499,473 - A4249_RS02350 0.62 +0.0
499,473 - A4249_RS02350 0.62 -0.7

Or see this region's nucleotide sequence