Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS01415

Experiment: Inosine 0.3728 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS01405 and A4249_RS01410 overlap by 1 nucleotidesA4249_RS01410 and A4249_RS01415 are separated by 2 nucleotidesA4249_RS01415 and A4249_RS01420 are separated by 29 nucleotidesA4249_RS01420 and A4249_RS01425 overlap by 4 nucleotides A4249_RS01405: A4249_RS01405 - hypothetical protein, at 262,830 to 263,246 _RS01405 A4249_RS01410: A4249_RS01410 - hypothetical protein, at 263,246 to 263,914 _RS01410 A4249_RS01415: A4249_RS01415 - phage Gp37/Gp68 family protein, at 263,917 to 265,023 _RS01415 A4249_RS01420: A4249_RS01420 - hypothetical protein, at 265,053 to 265,709 _RS01420 A4249_RS01425: A4249_RS01425 - hypothetical protein, at 265,706 to 266,212 _RS01425 Position (kb) 263 264 265 266Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 262.918 kb on - strand, within A4249_RS01405at 262.918 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.015 kb on - strand, within A4249_RS01405at 263.158 kb on - strand, within A4249_RS01405at 263.158 kb on - strand, within A4249_RS01405at 263.347 kb on - strand, within A4249_RS01410at 263.347 kb on - strand, within A4249_RS01410at 263.347 kb on - strand, within A4249_RS01410at 263.347 kb on - strand, within A4249_RS01410at 263.347 kb on - strand, within A4249_RS01410at 263.347 kb on - strand, within A4249_RS01410at 263.375 kb on + strand, within A4249_RS01410at 263.375 kb on + strand, within A4249_RS01410at 263.375 kb on + strand, within A4249_RS01410at 263.375 kb on + strand, within A4249_RS01410at 263.451 kb on - strand, within A4249_RS01410at 263.553 kb on + strand, within A4249_RS01410at 263.554 kb on - strand, within A4249_RS01410at 263.554 kb on - strand, within A4249_RS01410at 263.554 kb on - strand, within A4249_RS01410at 263.554 kb on - strand, within A4249_RS01410at 263.621 kb on + strand, within A4249_RS01410at 263.622 kb on - strand, within A4249_RS01410at 263.622 kb on - strand, within A4249_RS01410at 263.622 kb on - strand, within A4249_RS01410at 263.622 kb on - strand, within A4249_RS01410at 263.641 kb on + strand, within A4249_RS01410at 263.661 kb on - strand, within A4249_RS01410at 263.661 kb on - strand, within A4249_RS01410at 263.661 kb on - strand, within A4249_RS01410at 263.679 kb on - strand, within A4249_RS01410at 263.679 kb on - strand, within A4249_RS01410at 263.776 kb on - strand, within A4249_RS01410at 263.807 kb on - strand, within A4249_RS01410at 263.807 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.847 kb on - strand, within A4249_RS01410at 263.849 kb on + strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.850 kb on - strandat 263.910 kb on - strandat 264.007 kb on + strandat 264.007 kb on + strandat 264.007 kb on + strandat 264.007 kb on + strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.008 kb on - strandat 264.298 kb on + strand, within A4249_RS01415at 264.299 kb on - strand, within A4249_RS01415at 264.628 kb on + strand, within A4249_RS01415at 265.004 kb on - strandat 265.052 kb on + strandat 265.053 kb on - strandat 265.053 kb on - strandat 265.209 kb on + strand, within A4249_RS01420at 265.255 kb on - strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.276 kb on + strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.277 kb on - strand, within A4249_RS01420at 265.308 kb on + strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.309 kb on - strand, within A4249_RS01420at 265.315 kb on - strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.365 kb on + strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.366 kb on - strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.374 kb on + strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.375 kb on - strand, within A4249_RS01420at 265.608 kb on + strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.609 kb on - strand, within A4249_RS01420at 265.676 kb on + strandat 265.677 kb on - strandat 265.677 kb on - strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.730 kb on + strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.731 kb on - strandat 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.814 kb on + strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.815 kb on - strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.883 kb on + strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.884 kb on - strand, within A4249_RS01425at 265.904 kb on + strand, within A4249_RS01425at 265.905 kb on - strand, within A4249_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Inosine 0.3728 mM (C)
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262,918 - A4249_RS01405 0.21 +0.8
262,918 - A4249_RS01405 0.21 -0.1
263,015 - A4249_RS01405 0.44 +1.2
263,015 - A4249_RS01405 0.44 +0.1
263,015 - A4249_RS01405 0.44 +0.8
263,015 - A4249_RS01405 0.44 -0.1
263,015 - A4249_RS01405 0.44 +0.1
263,015 - A4249_RS01405 0.44 -0.4
263,015 - A4249_RS01405 0.44 -0.6
263,015 - A4249_RS01405 0.44 +0.3
263,015 - A4249_RS01405 0.44 +0.0
263,015 - A4249_RS01405 0.44 +2.0
263,015 - A4249_RS01405 0.44 +1.7
263,158 - A4249_RS01405 0.79 -0.6
263,158 - A4249_RS01405 0.79 +0.0
263,347 - A4249_RS01410 0.15 -0.2
263,347 - A4249_RS01410 0.15 +0.3
263,347 - A4249_RS01410 0.15 -1.4
263,347 - A4249_RS01410 0.15 +0.1
263,347 - A4249_RS01410 0.15 -0.6
263,347 - A4249_RS01410 0.15 -0.2
263,375 + A4249_RS01410 0.19 -0.1
263,375 + A4249_RS01410 0.19 +0.1
263,375 + A4249_RS01410 0.19 -0.9
263,375 + A4249_RS01410 0.19 -0.2
263,451 - A4249_RS01410 0.31 -0.9
263,553 + A4249_RS01410 0.46 -1.2
263,554 - A4249_RS01410 0.46 +0.1
263,554 - A4249_RS01410 0.46 -0.8
263,554 - A4249_RS01410 0.46 -0.1
263,554 - A4249_RS01410 0.46 -0.4
263,621 + A4249_RS01410 0.56 +0.6
263,622 - A4249_RS01410 0.56 +0.4
263,622 - A4249_RS01410 0.56 -0.6
263,622 - A4249_RS01410 0.56 -0.8
263,622 - A4249_RS01410 0.56 -0.4
263,641 + A4249_RS01410 0.59 +1.9
263,661 - A4249_RS01410 0.62 -0.9
263,661 - A4249_RS01410 0.62 +1.1
263,661 - A4249_RS01410 0.62 -0.4
263,679 - A4249_RS01410 0.65 -0.6
263,679 - A4249_RS01410 0.65 -0.5
263,776 - A4249_RS01410 0.79 +0.1
263,807 - A4249_RS01410 0.84 +0.5
263,807 - A4249_RS01410 0.84 +1.9
263,847 - A4249_RS01410 0.90 -0.8
263,847 - A4249_RS01410 0.90 -0.2
263,847 - A4249_RS01410 0.90 +0.4
263,847 - A4249_RS01410 0.90 -0.3
263,847 - A4249_RS01410 0.90 -1.6
263,847 - A4249_RS01410 0.90 +0.6
263,847 - A4249_RS01410 0.90 +0.1
263,847 - A4249_RS01410 0.90 -0.6
263,849 + +0.8
263,850 - -0.9
263,850 - -0.0
263,850 - -0.0
263,850 - -0.4
263,850 - -0.4
263,850 - -0.5
263,850 - +1.3
263,850 - -0.1
263,850 - -0.3
263,910 - -0.0
264,007 + -1.1
264,007 + +1.0
264,007 + +0.3
264,007 + -0.1
264,008 - -0.5
264,008 - +0.0
264,008 - -3.0
264,008 - -0.2
264,008 - +0.4
264,008 - -1.3
264,298 + A4249_RS01415 0.34 -0.7
264,299 - A4249_RS01415 0.35 +0.7
264,628 + A4249_RS01415 0.64 -0.3
265,004 - +0.1
265,052 + +0.1
265,053 - -0.7
265,053 - +0.2
265,209 + A4249_RS01420 0.24 -1.2
265,255 - A4249_RS01420 0.31 -0.0
265,276 + A4249_RS01420 0.34 -1.0
265,276 + A4249_RS01420 0.34 +0.3
265,277 - A4249_RS01420 0.34 +0.3
265,277 - A4249_RS01420 0.34 -1.4
265,277 - A4249_RS01420 0.34 -0.5
265,277 - A4249_RS01420 0.34 -0.6
265,277 - A4249_RS01420 0.34 +0.2
265,308 + A4249_RS01420 0.39 +1.1
265,309 - A4249_RS01420 0.39 -1.5
265,309 - A4249_RS01420 0.39 +1.0
265,309 - A4249_RS01420 0.39 -0.1
265,309 - A4249_RS01420 0.39 +0.1
265,309 - A4249_RS01420 0.39 +0.5
265,315 - A4249_RS01420 0.40 -0.3
265,365 + A4249_RS01420 0.47 -0.0
265,365 + A4249_RS01420 0.47 +0.4
265,366 - A4249_RS01420 0.48 +1.1
265,366 - A4249_RS01420 0.48 -0.1
265,366 - A4249_RS01420 0.48 -0.5
265,366 - A4249_RS01420 0.48 -0.2
265,374 + A4249_RS01420 0.49 -0.8
265,374 + A4249_RS01420 0.49 +1.9
265,375 - A4249_RS01420 0.49 -0.3
265,375 - A4249_RS01420 0.49 -0.3
265,608 + A4249_RS01420 0.84 +0.1
265,609 - A4249_RS01420 0.85 -0.1
265,609 - A4249_RS01420 0.85 +1.1
265,676 + +0.3
265,677 - -0.4
265,677 - +1.5
265,730 + +1.9
265,730 + +0.4
265,730 + +0.5
265,730 + +1.5
265,730 + -0.7
265,731 - -0.0
265,731 - +0.4
265,731 - +0.9
265,731 - -0.2
265,731 - -1.0
265,731 - -1.0
265,814 + A4249_RS01425 0.21 +0.6
265,814 + A4249_RS01425 0.21 +1.6
265,814 + A4249_RS01425 0.21 +0.5
265,814 + A4249_RS01425 0.21 -1.2
265,814 + A4249_RS01425 0.21 +0.4
265,815 - A4249_RS01425 0.21 -1.2
265,815 - A4249_RS01425 0.21 +1.1
265,815 - A4249_RS01425 0.21 +0.3
265,815 - A4249_RS01425 0.21 -0.4
265,883 + A4249_RS01425 0.35 -2.5
265,883 + A4249_RS01425 0.35 -1.2
265,883 + A4249_RS01425 0.35 -0.2
265,883 + A4249_RS01425 0.35 -1.5
265,883 + A4249_RS01425 0.35 +0.3
265,884 - A4249_RS01425 0.35 -0.2
265,884 - A4249_RS01425 0.35 +1.0
265,884 - A4249_RS01425 0.35 +0.4
265,884 - A4249_RS01425 0.35 -0.9
265,884 - A4249_RS01425 0.35 -0.1
265,904 + A4249_RS01425 0.39 +0.8
265,905 - A4249_RS01425 0.39 -0.4

Or see this region's nucleotide sequence