Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03126

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03125 and MPMX26_03126 are separated by 856 nucleotidesMPMX26_03126 and MPMX26_03127 are separated by 314 nucleotidesMPMX26_03127 and MPMX26_03128 are separated by 44 nucleotides MPMX26_03125: MPMX26_03125 - Thiol:disulfide interchange protein DsbA, at 37,868 to 38,482 _03125 MPMX26_03126: MPMX26_03126 - DNA-invertase hin, at 39,339 to 39,905 _03126 MPMX26_03127: MPMX26_03127 - Arsenate reductase, at 40,220 to 40,648 _03127 MPMX26_03128: MPMX26_03128 - hypothetical protein, at 40,693 to 41,016 _03128 Position (kb) 39 40Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 38.352 kb on - strand, within MPMX26_03125at 38.352 kb on - strand, within MPMX26_03125at 38.352 kb on - strand, within MPMX26_03125at 38.391 kb on + strand, within MPMX26_03125at 38.404 kb on - strand, within MPMX26_03125at 38.404 kb on - strand, within MPMX26_03125at 38.404 kb on - strand, within MPMX26_03125at 38.404 kb on - strand, within MPMX26_03125at 38.420 kb on - strand, within MPMX26_03125at 38.446 kb on - strandat 38.446 kb on - strandat 38.446 kb on - strandat 38.515 kb on + strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.523 kb on - strandat 38.528 kb on - strandat 38.598 kb on - strandat 38.802 kb on - strandat 39.417 kb on + strand, within MPMX26_03126at 39.435 kb on + strand, within MPMX26_03126at 39.448 kb on + strand, within MPMX26_03126at 39.512 kb on + strand, within MPMX26_03126at 39.858 kb on - strandat 39.873 kb on - strandat 39.873 kb on - strandat 39.881 kb on - strandat 40.243 kb on + strandat 40.250 kb on + strandat 40.255 kb on + strandat 40.267 kb on + strand, within MPMX26_03127at 40.349 kb on + strand, within MPMX26_03127at 40.376 kb on + strand, within MPMX26_03127at 40.412 kb on + strand, within MPMX26_03127at 40.412 kb on + strand, within MPMX26_03127at 40.454 kb on + strand, within MPMX26_03127at 40.454 kb on + strand, within MPMX26_03127at 40.520 kb on + strand, within MPMX26_03127at 40.527 kb on + strand, within MPMX26_03127at 40.527 kb on + strand, within MPMX26_03127at 40.686 kb on + strandat 40.686 kb on + strandat 40.735 kb on + strand, within MPMX26_03128at 40.735 kb on + strand, within MPMX26_03128at 40.737 kb on + strand, within MPMX26_03128at 40.831 kb on + strand, within MPMX26_03128at 40.832 kb on + strand, within MPMX26_03128at 40.832 kb on + strand, within MPMX26_03128at 40.850 kb on + strand, within MPMX26_03128at 40.850 kb on + strand, within MPMX26_03128at 40.861 kb on + strand, within MPMX26_03128at 40.886 kb on + strand, within MPMX26_03128at 40.886 kb on + strand, within MPMX26_03128at 40.888 kb on + strand, within MPMX26_03128at 40.888 kb on + strand, within MPMX26_03128at 40.888 kb on + strand, within MPMX26_03128at 40.893 kb on + strand, within MPMX26_03128

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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38,352 - MPMX26_03125 0.79 +2.8
38,352 - MPMX26_03125 0.79 -0.3
38,352 - MPMX26_03125 0.79 +0.3
38,391 + MPMX26_03125 0.85 +0.9
38,404 - MPMX26_03125 0.87 -0.8
38,404 - MPMX26_03125 0.87 +1.3
38,404 - MPMX26_03125 0.87 +0.4
38,404 - MPMX26_03125 0.87 -0.2
38,420 - MPMX26_03125 0.90 +0.3
38,446 - -0.4
38,446 - +0.1
38,446 - +0.8
38,515 + +1.8
38,523 - -0.1
38,523 - +0.9
38,523 - +1.5
38,523 - -0.4
38,523 - +0.4
38,523 - +0.8
38,523 - +0.8
38,528 - +0.9
38,598 - +1.2
38,802 - +1.8
39,417 + MPMX26_03126 0.14 +1.5
39,435 + MPMX26_03126 0.17 +0.2
39,448 + MPMX26_03126 0.19 +1.6
39,512 + MPMX26_03126 0.31 +0.9
39,858 - -0.2
39,873 - +1.5
39,873 - +0.6
39,881 - -1.6
40,243 + -0.0
40,250 + +0.4
40,255 + +0.3
40,267 + MPMX26_03127 0.11 +1.3
40,349 + MPMX26_03127 0.30 +0.9
40,376 + MPMX26_03127 0.36 +0.3
40,412 + MPMX26_03127 0.45 +0.3
40,412 + MPMX26_03127 0.45 -0.0
40,454 + MPMX26_03127 0.55 +1.8
40,454 + MPMX26_03127 0.55 -1.3
40,520 + MPMX26_03127 0.70 +0.5
40,527 + MPMX26_03127 0.72 +0.8
40,527 + MPMX26_03127 0.72 +0.2
40,686 + -1.1
40,686 + +4.1
40,735 + MPMX26_03128 0.13 +1.5
40,735 + MPMX26_03128 0.13 +0.4
40,737 + MPMX26_03128 0.14 -0.4
40,831 + MPMX26_03128 0.43 -0.2
40,832 + MPMX26_03128 0.43 -0.7
40,832 + MPMX26_03128 0.43 +2.2
40,850 + MPMX26_03128 0.48 +0.4
40,850 + MPMX26_03128 0.48 +0.6
40,861 + MPMX26_03128 0.52 +0.1
40,886 + MPMX26_03128 0.60 +0.3
40,886 + MPMX26_03128 0.60 -0.7
40,888 + MPMX26_03128 0.60 -0.8
40,888 + MPMX26_03128 0.60 -2.4
40,888 + MPMX26_03128 0.60 +0.2
40,893 + MPMX26_03128 0.62 -0.3

Or see this region's nucleotide sequence