Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02821 and MPMX26_02822 are separated by 12 nucleotides MPMX26_02822 and MPMX26_02823 are separated by 10 nucleotides MPMX26_02823 and MPMX26_02824 are separated by 11 nucleotides
MPMX26_02821: MPMX26_02821 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase, at 2,909,484 to 2,910,983
_02821
MPMX26_02822: MPMX26_02822 - Peptidoglycan D,D-transpeptidase FtsI, at 2,910,996 to 2,912,819
_02822
MPMX26_02823: MPMX26_02823 - Cell division protein FtsL, at 2,912,830 to 2,913,177
_02823
MPMX26_02824: MPMX26_02824 - Ribosomal RNA small subunit methyltransferase H, at 2,913,189 to 2,914,100
_02824
Position (kb)
2910
2911
2912
2913 Strain fitness (log2 ratio)
-2
-1
0
1 at 2911.029 kb on - strand at 2913.194 kb on - strand at 2913.194 kb on - strand at 2913.199 kb on - strand at 2913.216 kb on - strand at 2913.216 kb on - strand at 2913.217 kb on - strand at 2913.231 kb on - strand at 2913.305 kb on - strand, within MPMX26_02824 at 2913.332 kb on - strand, within MPMX26_02824 at 2913.386 kb on - strand, within MPMX26_02824 at 2913.402 kb on - strand, within MPMX26_02824 at 2913.419 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.453 kb on - strand, within MPMX26_02824 at 2913.473 kb on - strand, within MPMX26_02824 at 2913.752 kb on - strand, within MPMX26_02824
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 2,911,029 - +0.3 2,913,194 - -0.5 2,913,194 - -0.3 2,913,199 - +0.7 2,913,216 - -1.4 2,913,216 - -1.2 2,913,217 - -0.7 2,913,231 - +0.2 2,913,305 - MPMX26_02824 0.13 -1.8 2,913,332 - MPMX26_02824 0.16 -0.8 2,913,386 - MPMX26_02824 0.22 -1.8 2,913,402 - MPMX26_02824 0.23 +0.3 2,913,419 - MPMX26_02824 0.25 -0.3 2,913,453 - MPMX26_02824 0.29 -1.8 2,913,453 - MPMX26_02824 0.29 -0.9 2,913,453 - MPMX26_02824 0.29 -1.1 2,913,453 - MPMX26_02824 0.29 -0.1 2,913,453 - MPMX26_02824 0.29 -0.7 2,913,453 - MPMX26_02824 0.29 -0.4 2,913,473 - MPMX26_02824 0.31 -1.5 2,913,752 - MPMX26_02824 0.62 +0.1
Or see this region's nucleotide sequence