Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01948

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01947 and MPMX26_01948 are separated by 63 nucleotidesMPMX26_01948 and MPMX26_01949 are separated by 151 nucleotides MPMX26_01947: MPMX26_01947 - HTH-type transcriptional regulator HmrR, at 1,996,674 to 1,997,066 _01947 MPMX26_01948: MPMX26_01948 - Copper-transporting P-type ATPase, at 1,997,130 to 1,999,607 _01948 MPMX26_01949: MPMX26_01949 - hypothetical protein, at 1,999,759 to 1,999,953 _01949 Position (kb) 1997 1998 1999 2000Strain fitness (log2 ratio) -1 0 1at 1998.806 kb on - strand, within MPMX26_01948at 1999.786 kb on + strand, within MPMX26_01949at 1999.803 kb on + strand, within MPMX26_01949at 1999.809 kb on + strand, within MPMX26_01949at 1999.833 kb on + strand, within MPMX26_01949

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,998,806 - MPMX26_01948 0.68 +0.2
1,999,786 + MPMX26_01949 0.14 +0.3
1,999,803 + MPMX26_01949 0.23 +0.1
1,999,809 + MPMX26_01949 0.26 -0.4
1,999,833 + MPMX26_01949 0.38 -0.1

Or see this region's nucleotide sequence