Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01945

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01944 and MPMX26_01945 are separated by 13 nucleotidesMPMX26_01945 and MPMX26_01946 overlap by 8 nucleotides MPMX26_01944: MPMX26_01944 - Putative multidrug resistance protein MdtD, at 1,991,486 to 1,992,922 _01944 MPMX26_01945: MPMX26_01945 - L-lysine N6-monooxygenase, at 1,992,936 to 1,994,345 _01945 MPMX26_01946: MPMX26_01946 - N(2)-citryl-N(6)-acetyl-N(6)-hydroxylysine synthase, at 1,994,338 to 1,996,128 _01946 Position (kb) 1992 1993 1994 1995Strain fitness (log2 ratio) -1 0 1at 1993.779 kb on + strand, within MPMX26_01945at 1993.782 kb on - strand, within MPMX26_01945at 1994.355 kb on + strandat 1995.134 kb on + strand, within MPMX26_01946

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,993,779 + MPMX26_01945 0.60 +0.5
1,993,782 - MPMX26_01945 0.60 +0.8
1,994,355 + -0.1
1,995,134 + MPMX26_01946 0.44 +0.9

Or see this region's nucleotide sequence