Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_01750 and MPMX26_01751 are separated by 228 nucleotides MPMX26_01751 and MPMX26_01752 are separated by 87 nucleotides
MPMX26_01750: MPMX26_01750 - 3-ketoacyl-CoA thiolase FadI, at 1,807,562 to 1,809,052
_01750
MPMX26_01751: MPMX26_01751 - hypothetical protein, at 1,809,281 to 1,809,706
_01751
MPMX26_01752: MPMX26_01752 - hypothetical protein, at 1,809,794 to 1,810,681
_01752
Position (kb)
1809
1810 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1808.296 kb on + strand, within MPMX26_01750 at 1808.296 kb on + strand, within MPMX26_01750 at 1808.303 kb on + strand, within MPMX26_01750 at 1808.425 kb on + strand, within MPMX26_01750 at 1808.425 kb on + strand, within MPMX26_01750 at 1808.432 kb on + strand, within MPMX26_01750 at 1808.518 kb on + strand, within MPMX26_01750 at 1808.518 kb on + strand, within MPMX26_01750 at 1808.518 kb on + strand, within MPMX26_01750 at 1808.518 kb on + strand, within MPMX26_01750 at 1808.519 kb on + strand, within MPMX26_01750 at 1808.519 kb on + strand, within MPMX26_01750 at 1808.528 kb on + strand, within MPMX26_01750 at 1808.531 kb on + strand, within MPMX26_01750 at 1808.624 kb on + strand, within MPMX26_01750 at 1808.624 kb on + strand, within MPMX26_01750 at 1808.633 kb on + strand, within MPMX26_01750 at 1808.687 kb on + strand, within MPMX26_01750 at 1808.692 kb on + strand, within MPMX26_01750 at 1808.701 kb on + strand, within MPMX26_01750 at 1808.701 kb on + strand, within MPMX26_01750 at 1808.711 kb on + strand, within MPMX26_01750 at 1808.711 kb on + strand, within MPMX26_01750 at 1808.711 kb on + strand, within MPMX26_01750 at 1808.722 kb on + strand, within MPMX26_01750 at 1808.839 kb on + strand, within MPMX26_01750 at 1809.017 kb on + strand at 1809.025 kb on + strand at 1809.025 kb on + strand at 1809.425 kb on - strand, within MPMX26_01751 at 1809.583 kb on + strand, within MPMX26_01751 at 1809.962 kb on + strand, within MPMX26_01752 at 1810.073 kb on + strand, within MPMX26_01752 at 1810.097 kb on + strand, within MPMX26_01752 at 1810.139 kb on + strand, within MPMX26_01752 at 1810.310 kb on + strand, within MPMX26_01752 at 1810.624 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 1,808,296 + MPMX26_01750 0.49 +0.7 1,808,296 + MPMX26_01750 0.49 +0.6 1,808,303 + MPMX26_01750 0.50 -2.2 1,808,425 + MPMX26_01750 0.58 -1.6 1,808,425 + MPMX26_01750 0.58 +0.3 1,808,432 + MPMX26_01750 0.58 -0.4 1,808,518 + MPMX26_01750 0.64 +0.8 1,808,518 + MPMX26_01750 0.64 -0.3 1,808,518 + MPMX26_01750 0.64 -0.4 1,808,518 + MPMX26_01750 0.64 -0.6 1,808,519 + MPMX26_01750 0.64 -1.1 1,808,519 + MPMX26_01750 0.64 +2.3 1,808,528 + MPMX26_01750 0.65 +0.8 1,808,531 + MPMX26_01750 0.65 +0.6 1,808,624 + MPMX26_01750 0.71 +0.0 1,808,624 + MPMX26_01750 0.71 +1.3 1,808,633 + MPMX26_01750 0.72 -1.3 1,808,687 + MPMX26_01750 0.75 -1.7 1,808,692 + MPMX26_01750 0.76 -0.3 1,808,701 + MPMX26_01750 0.76 -0.6 1,808,701 + MPMX26_01750 0.76 +1.5 1,808,711 + MPMX26_01750 0.77 -2.1 1,808,711 + MPMX26_01750 0.77 -0.7 1,808,711 + MPMX26_01750 0.77 -0.9 1,808,722 + MPMX26_01750 0.78 -1.1 1,808,839 + MPMX26_01750 0.86 -1.2 1,809,017 + +0.6 1,809,025 + -0.1 1,809,025 + +0.0 1,809,425 - MPMX26_01751 0.34 +1.7 1,809,583 + MPMX26_01751 0.71 +1.4 1,809,962 + MPMX26_01752 0.19 -0.2 1,810,073 + MPMX26_01752 0.31 +1.3 1,810,097 + MPMX26_01752 0.34 +1.1 1,810,139 + MPMX26_01752 0.39 +0.7 1,810,310 + MPMX26_01752 0.58 +0.3 1,810,624 + +0.3
Or see this region's nucleotide sequence