Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01470

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01469 and MPMX26_01470 are separated by 74 nucleotidesMPMX26_01470 and MPMX26_01471 are separated by 97 nucleotides MPMX26_01469: MPMX26_01469 - Aspartate ammonia-lyase, at 1,522,876 to 1,524,330 _01469 MPMX26_01470: MPMX26_01470 - hypothetical protein, at 1,524,405 to 1,524,845 _01470 MPMX26_01471: MPMX26_01471 - Cardiolipin synthase C, at 1,524,943 to 1,526,496 _01471 Position (kb) 1524 1525Strain fitness (log2 ratio) -1 0 1 2at 1523.415 kb on + strand, within MPMX26_01469at 1523.440 kb on + strand, within MPMX26_01469at 1523.476 kb on + strand, within MPMX26_01469at 1523.478 kb on + strand, within MPMX26_01469at 1523.479 kb on + strand, within MPMX26_01469at 1523.479 kb on + strand, within MPMX26_01469at 1523.520 kb on + strand, within MPMX26_01469at 1523.580 kb on + strand, within MPMX26_01469at 1523.580 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.602 kb on + strand, within MPMX26_01469at 1523.603 kb on + strand, within MPMX26_01469at 1523.607 kb on + strand, within MPMX26_01469at 1523.614 kb on + strand, within MPMX26_01469at 1523.614 kb on + strand, within MPMX26_01469at 1523.619 kb on + strand, within MPMX26_01469at 1523.622 kb on - strand, within MPMX26_01469at 1523.685 kb on + strand, within MPMX26_01469at 1523.821 kb on + strand, within MPMX26_01469at 1523.848 kb on + strand, within MPMX26_01469at 1523.917 kb on + strand, within MPMX26_01469at 1523.929 kb on + strand, within MPMX26_01469at 1523.970 kb on + strand, within MPMX26_01469at 1523.970 kb on + strand, within MPMX26_01469at 1523.970 kb on + strand, within MPMX26_01469at 1523.970 kb on + strand, within MPMX26_01469at 1523.995 kb on + strand, within MPMX26_01469at 1524.082 kb on + strand, within MPMX26_01469at 1524.103 kb on + strand, within MPMX26_01469at 1524.177 kb on + strand, within MPMX26_01469at 1524.180 kb on + strand, within MPMX26_01469at 1524.180 kb on + strand, within MPMX26_01469at 1524.429 kb on - strandat 1524.527 kb on - strand, within MPMX26_01470at 1524.563 kb on - strand, within MPMX26_01470at 1524.563 kb on - strand, within MPMX26_01470at 1524.564 kb on - strand, within MPMX26_01470at 1524.599 kb on - strand, within MPMX26_01470at 1524.608 kb on - strand, within MPMX26_01470at 1524.656 kb on - strand, within MPMX26_01470at 1524.656 kb on - strand, within MPMX26_01470at 1524.656 kb on - strand, within MPMX26_01470at 1524.656 kb on - strand, within MPMX26_01470at 1524.695 kb on - strand, within MPMX26_01470at 1524.719 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1524.734 kb on - strand, within MPMX26_01470at 1525.290 kb on + strand, within MPMX26_01471

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,523,415 + MPMX26_01469 0.37 +0.4
1,523,440 + MPMX26_01469 0.39 +0.9
1,523,476 + MPMX26_01469 0.41 -0.6
1,523,478 + MPMX26_01469 0.41 -0.1
1,523,479 + MPMX26_01469 0.41 -0.2
1,523,479 + MPMX26_01469 0.41 +0.9
1,523,520 + MPMX26_01469 0.44 -0.4
1,523,580 + MPMX26_01469 0.48 -1.1
1,523,580 + MPMX26_01469 0.48 +0.4
1,523,602 + MPMX26_01469 0.50 +0.2
1,523,602 + MPMX26_01469 0.50 +0.6
1,523,602 + MPMX26_01469 0.50 +0.4
1,523,602 + MPMX26_01469 0.50 -0.5
1,523,602 + MPMX26_01469 0.50 -0.5
1,523,602 + MPMX26_01469 0.50 +0.9
1,523,602 + MPMX26_01469 0.50 -0.4
1,523,602 + MPMX26_01469 0.50 +0.4
1,523,602 + MPMX26_01469 0.50 -0.0
1,523,603 + MPMX26_01469 0.50 -0.3
1,523,607 + MPMX26_01469 0.50 -1.2
1,523,614 + MPMX26_01469 0.51 -0.4
1,523,614 + MPMX26_01469 0.51 +0.1
1,523,619 + MPMX26_01469 0.51 +0.2
1,523,622 - MPMX26_01469 0.51 -0.9
1,523,685 + MPMX26_01469 0.56 +0.7
1,523,821 + MPMX26_01469 0.65 +0.8
1,523,848 + MPMX26_01469 0.67 +0.1
1,523,917 + MPMX26_01469 0.72 +0.8
1,523,929 + MPMX26_01469 0.72 +0.2
1,523,970 + MPMX26_01469 0.75 +0.1
1,523,970 + MPMX26_01469 0.75 -0.4
1,523,970 + MPMX26_01469 0.75 +0.9
1,523,970 + MPMX26_01469 0.75 -0.1
1,523,995 + MPMX26_01469 0.77 +2.3
1,524,082 + MPMX26_01469 0.83 -0.1
1,524,103 + MPMX26_01469 0.84 +1.9
1,524,177 + MPMX26_01469 0.89 +0.9
1,524,180 + MPMX26_01469 0.90 +2.5
1,524,180 + MPMX26_01469 0.90 +0.7
1,524,429 - -0.3
1,524,527 - MPMX26_01470 0.28 -0.7
1,524,563 - MPMX26_01470 0.36 +0.3
1,524,563 - MPMX26_01470 0.36 -0.3
1,524,564 - MPMX26_01470 0.36 -0.9
1,524,599 - MPMX26_01470 0.44 -0.2
1,524,608 - MPMX26_01470 0.46 -1.1
1,524,656 - MPMX26_01470 0.57 -0.2
1,524,656 - MPMX26_01470 0.57 +1.1
1,524,656 - MPMX26_01470 0.57 -0.7
1,524,656 - MPMX26_01470 0.57 -0.6
1,524,695 - MPMX26_01470 0.66 -1.6
1,524,719 - MPMX26_01470 0.71 -0.9
1,524,734 - MPMX26_01470 0.75 -0.1
1,524,734 - MPMX26_01470 0.75 +1.2
1,524,734 - MPMX26_01470 0.75 -0.4
1,524,734 - MPMX26_01470 0.75 +1.2
1,524,734 - MPMX26_01470 0.75 -0.1
1,524,734 - MPMX26_01470 0.75 -0.3
1,524,734 - MPMX26_01470 0.75 +0.3
1,525,290 + MPMX26_01471 0.22 +0.3

Or see this region's nucleotide sequence