Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00860 and MPMX26_00861 overlap by 53 nucleotides MPMX26_00861 and MPMX26_00862 are separated by 234 nucleotides MPMX26_00862 and MPMX26_00863 overlap by 37 nucleotides
MPMX26_00860: MPMX26_00860 - L-threonine 3-dehydrogenase, at 906,817 to 907,875
_00860
MPMX26_00861: MPMX26_00861 - Mycocerosic acid synthase-like polyketide synthase, at 907,823 to 908,818
_00861
MPMX26_00862: MPMX26_00862 - ISNCY family transposase ISAba32, at 909,053 to 909,640
_00862
MPMX26_00863: MPMX26_00863 - ISNCY family transposase ISAba32, at 909,604 to 910,386
_00863
Position (kb) 907
908
909 Strain fitness (log2 ratio) -1
0
1
2 at 906.874 kb on - strand at 906.918 kb on - strand at 906.933 kb on - strand, within MPMX26_00860 at 907.029 kb on - strand, within MPMX26_00860 at 907.066 kb on - strand, within MPMX26_00860 at 907.173 kb on - strand, within MPMX26_00860 at 907.753 kb on - strand, within MPMX26_00860 at 907.813 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.870 kb on - strand at 907.903 kb on - strand at 907.970 kb on - strand, within MPMX26_00861 at 907.972 kb on - strand, within MPMX26_00861 at 907.984 kb on - strand, within MPMX26_00861 at 908.183 kb on - strand, within MPMX26_00861 at 908.354 kb on - strand, within MPMX26_00861 at 908.354 kb on - strand, within MPMX26_00861 at 908.360 kb on - strand, within MPMX26_00861 at 908.384 kb on - strand, within MPMX26_00861 at 908.543 kb on - strand, within MPMX26_00861 at 908.573 kb on - strand, within MPMX26_00861 at 908.612 kb on - strand, within MPMX26_00861 at 908.627 kb on - strand, within MPMX26_00861 at 908.750 kb on - strand at 908.810 kb on - strand at 908.810 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 906,874 - +0.9 906,918 - +0.8 906,933 - MPMX26_00860 0.11 +1.3 907,029 - MPMX26_00860 0.20 +0.1 907,066 - MPMX26_00860 0.24 +2.5 907,173 - MPMX26_00860 0.34 +1.3 907,753 - MPMX26_00860 0.88 -0.3 907,813 - +1.1 907,870 - -1.0 907,870 - +0.5 907,870 - -1.5 907,870 - -0.5 907,870 - +0.3 907,870 - +1.1 907,903 - +1.5 907,970 - MPMX26_00861 0.15 -1.2 907,972 - MPMX26_00861 0.15 +0.5 907,984 - MPMX26_00861 0.16 -0.7 908,183 - MPMX26_00861 0.36 -1.5 908,354 - MPMX26_00861 0.53 +0.3 908,354 - MPMX26_00861 0.53 +0.6 908,360 - MPMX26_00861 0.54 +0.7 908,384 - MPMX26_00861 0.56 -0.3 908,543 - MPMX26_00861 0.72 +0.1 908,573 - MPMX26_00861 0.75 -0.1 908,612 - MPMX26_00861 0.79 +2.3 908,627 - MPMX26_00861 0.81 -1.5 908,750 - +0.1 908,810 - -0.8 908,810 - +0.9
Or see this region's nucleotide sequence