Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00741

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00738 and MPMX26_00739 are separated by 1 nucleotidesMPMX26_00739 and MPMX26_00740 are separated by 445 nucleotidesMPMX26_00740 and MPMX26_00741 are separated by 80 nucleotidesMPMX26_00741 and MPMX26_00742 are separated by 159 nucleotidesMPMX26_00742 and MPMX26_00743 are separated by 112 nucleotides MPMX26_00738: MPMX26_00738 - Phosphopantetheine adenylyltransferase, at 776,865 to 777,356 _00738 MPMX26_00739: MPMX26_00739 - Ferredoxin, at 777,358 to 777,621 _00739 MPMX26_00740: MPMX26_00740 - tRNA-Met, at 778,067 to 778,143 _00740 MPMX26_00741: MPMX26_00741 - hypothetical protein, at 778,224 to 778,628 _00741 MPMX26_00742: MPMX26_00742 - tRNA-Met, at 778,788 to 778,864 _00742 MPMX26_00743: MPMX26_00743 - hypothetical protein, at 778,977 to 780,014 _00743 Position (kb) 778 779Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 777.348 kb on + strandat 777.348 kb on + strandat 777.527 kb on + strand, within MPMX26_00739at 777.541 kb on + strand, within MPMX26_00739at 777.541 kb on + strand, within MPMX26_00739at 777.541 kb on + strand, within MPMX26_00739at 777.541 kb on + strand, within MPMX26_00739at 777.541 kb on + strand, within MPMX26_00739at 777.598 kb on + strandat 778.015 kb on + strandat 778.020 kb on + strandat 778.044 kb on + strandat 778.061 kb on + strandat 778.061 kb on + strandat 778.061 kb on + strandat 778.061 kb on + strandat 778.061 kb on + strandat 778.061 kb on + strandat 778.071 kb on + strandat 778.071 kb on + strandat 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.084 kb on + strand, within MPMX26_00740at 778.091 kb on + strand, within MPMX26_00740at 778.091 kb on + strand, within MPMX26_00740at 778.099 kb on + strand, within MPMX26_00740at 778.119 kb on + strand, within MPMX26_00740at 778.742 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.782 kb on + strandat 778.792 kb on + strandat 778.792 kb on + strandat 778.805 kb on + strand, within MPMX26_00742at 778.805 kb on + strand, within MPMX26_00742at 778.805 kb on + strand, within MPMX26_00742at 778.805 kb on + strand, within MPMX26_00742at 778.805 kb on + strand, within MPMX26_00742at 778.805 kb on + strand, within MPMX26_00742at 778.810 kb on + strand, within MPMX26_00742at 778.812 kb on + strand, within MPMX26_00742at 778.812 kb on + strand, within MPMX26_00742at 778.840 kb on + strand, within MPMX26_00742at 778.850 kb on + strand, within MPMX26_00742at 778.880 kb on + strandat 778.995 kb on - strandat 779.006 kb on + strandat 779.022 kb on - strandat 779.024 kb on - strandat 779.024 kb on - strandat 779.029 kb on - strandat 779.043 kb on - strandat 779.051 kb on - strandat 779.091 kb on - strand, within MPMX26_00743at 779.105 kb on - strand, within MPMX26_00743at 779.147 kb on - strand, within MPMX26_00743at 779.220 kb on - strand, within MPMX26_00743at 779.322 kb on - strand, within MPMX26_00743at 779.327 kb on - strand, within MPMX26_00743at 779.329 kb on - strand, within MPMX26_00743at 779.363 kb on - strand, within MPMX26_00743at 779.409 kb on - strand, within MPMX26_00743at 779.456 kb on - strand, within MPMX26_00743at 779.594 kb on - strand, within MPMX26_00743at 779.594 kb on - strand, within MPMX26_00743at 779.594 kb on - strand, within MPMX26_00743at 779.598 kb on - strand, within MPMX26_00743

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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777,348 + -0.9
777,348 + -1.0
777,527 + MPMX26_00739 0.64 -0.4
777,541 + MPMX26_00739 0.69 -0.8
777,541 + MPMX26_00739 0.69 +0.0
777,541 + MPMX26_00739 0.69 -0.7
777,541 + MPMX26_00739 0.69 +0.9
777,541 + MPMX26_00739 0.69 -2.1
777,598 + -0.2
778,015 + +0.2
778,020 + +0.2
778,044 + +0.0
778,061 + -0.7
778,061 + +0.1
778,061 + +3.2
778,061 + +1.3
778,061 + -0.6
778,061 + -1.4
778,071 + +0.2
778,071 + -0.4
778,084 + MPMX26_00740 0.22 -0.2
778,084 + MPMX26_00740 0.22 -0.7
778,084 + MPMX26_00740 0.22 -0.1
778,084 + MPMX26_00740 0.22 +0.7
778,084 + MPMX26_00740 0.22 -0.7
778,084 + MPMX26_00740 0.22 +0.4
778,084 + MPMX26_00740 0.22 +0.1
778,091 + MPMX26_00740 0.31 -0.0
778,091 + MPMX26_00740 0.31 +0.2
778,099 + MPMX26_00740 0.42 -0.7
778,119 + MPMX26_00740 0.68 +0.8
778,742 + +0.5
778,782 + +0.4
778,782 + -0.6
778,782 + -0.2
778,782 + -0.6
778,782 + +0.6
778,782 + +0.9
778,782 + -1.4
778,782 + -0.9
778,782 + -1.9
778,782 + -1.4
778,792 + -0.4
778,792 + -2.0
778,805 + MPMX26_00742 0.22 -1.1
778,805 + MPMX26_00742 0.22 -2.3
778,805 + MPMX26_00742 0.22 -2.1
778,805 + MPMX26_00742 0.22 -2.1
778,805 + MPMX26_00742 0.22 -3.0
778,805 + MPMX26_00742 0.22 -0.8
778,810 + MPMX26_00742 0.29 -2.3
778,812 + MPMX26_00742 0.31 +0.2
778,812 + MPMX26_00742 0.31 -2.8
778,840 + MPMX26_00742 0.68 -1.2
778,850 + MPMX26_00742 0.81 -1.1
778,880 + +0.3
778,995 - -0.0
779,006 + -0.7
779,022 - +0.3
779,024 - +0.7
779,024 - -0.1
779,029 - +0.8
779,043 - -0.1
779,051 - +0.1
779,091 - MPMX26_00743 0.11 +0.1
779,105 - MPMX26_00743 0.12 -0.8
779,147 - MPMX26_00743 0.16 -0.6
779,220 - MPMX26_00743 0.23 -0.5
779,322 - MPMX26_00743 0.33 -0.3
779,327 - MPMX26_00743 0.34 -0.1
779,329 - MPMX26_00743 0.34 +0.9
779,363 - MPMX26_00743 0.37 +0.2
779,409 - MPMX26_00743 0.42 -0.0
779,456 - MPMX26_00743 0.46 -0.5
779,594 - MPMX26_00743 0.59 +2.9
779,594 - MPMX26_00743 0.59 +0.1
779,594 - MPMX26_00743 0.59 +0.2
779,598 - MPMX26_00743 0.60 +0.1

Or see this region's nucleotide sequence