Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00370

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00369 and MPMX26_00370 are separated by 87 nucleotidesMPMX26_00370 and MPMX26_00371 are separated by 262 nucleotidesMPMX26_00371 and MPMX26_00372 are separated by 106 nucleotides MPMX26_00369: MPMX26_00369 - ATP-dependent DNA helicase PcrA, at 400,987 to 402,966 _00369 MPMX26_00370: MPMX26_00370 - hypothetical protein, at 403,054 to 403,305 _00370 MPMX26_00371: MPMX26_00371 - hypothetical protein, at 403,568 to 404,071 _00371 MPMX26_00372: MPMX26_00372 - hypothetical protein, at 404,178 to 404,456 _00372 Position (kb) 403 404Strain fitness (log2 ratio) -2 -1 0 1 2 3at 402.069 kb on + strand, within MPMX26_00369at 402.132 kb on + strand, within MPMX26_00369at 402.147 kb on + strand, within MPMX26_00369at 402.157 kb on + strand, within MPMX26_00369at 402.192 kb on + strand, within MPMX26_00369at 402.225 kb on + strand, within MPMX26_00369at 402.225 kb on + strand, within MPMX26_00369at 402.232 kb on + strand, within MPMX26_00369at 402.232 kb on + strand, within MPMX26_00369at 402.244 kb on + strand, within MPMX26_00369at 402.316 kb on + strand, within MPMX26_00369at 402.316 kb on + strand, within MPMX26_00369at 402.316 kb on + strand, within MPMX26_00369at 402.388 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.456 kb on + strand, within MPMX26_00369at 402.463 kb on + strand, within MPMX26_00369at 402.473 kb on + strand, within MPMX26_00369at 402.483 kb on + strand, within MPMX26_00369at 402.505 kb on + strand, within MPMX26_00369at 402.536 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.570 kb on + strand, within MPMX26_00369at 402.580 kb on + strand, within MPMX26_00369at 402.585 kb on + strand, within MPMX26_00369at 402.595 kb on + strand, within MPMX26_00369at 402.615 kb on + strand, within MPMX26_00369at 402.616 kb on + strand, within MPMX26_00369at 402.616 kb on + strand, within MPMX26_00369at 402.618 kb on + strand, within MPMX26_00369at 402.637 kb on + strand, within MPMX26_00369at 402.680 kb on + strand, within MPMX26_00369at 402.680 kb on + strand, within MPMX26_00369at 402.688 kb on - strand, within MPMX26_00369at 402.690 kb on + strand, within MPMX26_00369at 402.690 kb on + strand, within MPMX26_00369at 402.690 kb on + strand, within MPMX26_00369at 402.705 kb on + strand, within MPMX26_00369at 402.705 kb on + strand, within MPMX26_00369at 402.713 kb on - strand, within MPMX26_00369at 402.724 kb on + strand, within MPMX26_00369at 402.736 kb on + strand, within MPMX26_00369at 402.736 kb on + strand, within MPMX26_00369at 402.772 kb on + strandat 402.788 kb on + strandat 402.871 kb on + strandat 402.979 kb on + strandat 403.006 kb on + strandat 403.006 kb on + strandat 403.006 kb on + strandat 403.006 kb on + strandat 403.006 kb on + strandat 403.006 kb on + strandat 403.021 kb on + strandat 403.073 kb on + strandat 403.073 kb on + strandat 403.083 kb on + strand, within MPMX26_00370at 403.104 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.113 kb on + strand, within MPMX26_00370at 403.120 kb on + strand, within MPMX26_00370at 403.121 kb on - strand, within MPMX26_00370at 403.127 kb on + strand, within MPMX26_00370at 403.131 kb on + strand, within MPMX26_00370at 403.136 kb on + strand, within MPMX26_00370at 403.145 kb on + strand, within MPMX26_00370at 403.145 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.173 kb on + strand, within MPMX26_00370at 403.234 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.236 kb on + strand, within MPMX26_00370at 403.237 kb on + strand, within MPMX26_00370at 403.237 kb on + strand, within MPMX26_00370at 403.237 kb on + strand, within MPMX26_00370at 403.244 kb on + strand, within MPMX26_00370at 403.244 kb on + strand, within MPMX26_00370at 403.259 kb on + strand, within MPMX26_00370at 403.272 kb on + strand, within MPMX26_00370at 403.293 kb on + strandat 403.293 kb on + strandat 403.299 kb on + strandat 403.319 kb on + strandat 403.570 kb on + strandat 403.577 kb on + strandat 403.585 kb on + strandat 403.585 kb on + strandat 403.625 kb on + strand, within MPMX26_00371at 403.625 kb on + strand, within MPMX26_00371at 403.663 kb on + strand, within MPMX26_00371at 403.669 kb on + strand, within MPMX26_00371at 403.669 kb on + strand, within MPMX26_00371at 403.675 kb on + strand, within MPMX26_00371at 403.691 kb on + strand, within MPMX26_00371at 403.691 kb on + strand, within MPMX26_00371at 403.772 kb on + strand, within MPMX26_00371at 403.772 kb on + strand, within MPMX26_00371at 403.818 kb on + strand, within MPMX26_00371at 403.846 kb on + strand, within MPMX26_00371at 403.879 kb on + strand, within MPMX26_00371at 403.909 kb on + strand, within MPMX26_00371at 404.016 kb on + strand, within MPMX26_00371at 404.021 kb on + strandat 404.065 kb on + strandat 404.078 kb on + strandat 404.138 kb on + strandat 404.139 kb on + strandat 404.158 kb on + strandat 404.173 kb on + strandat 404.182 kb on + strandat 404.182 kb on + strandat 404.182 kb on + strandat 404.182 kb on + strandat 404.182 kb on + strandat 404.182 kb on + strandat 404.213 kb on + strand, within MPMX26_00372at 404.223 kb on + strand, within MPMX26_00372at 404.230 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.240 kb on + strand, within MPMX26_00372at 404.259 kb on + strand, within MPMX26_00372at 404.259 kb on + strand, within MPMX26_00372at 404.264 kb on + strand, within MPMX26_00372at 404.264 kb on + strand, within MPMX26_00372

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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402,069 + MPMX26_00369 0.55 -0.1
402,132 + MPMX26_00369 0.58 +0.1
402,147 + MPMX26_00369 0.59 +0.6
402,157 + MPMX26_00369 0.59 +2.0
402,192 + MPMX26_00369 0.61 +0.4
402,225 + MPMX26_00369 0.63 -0.2
402,225 + MPMX26_00369 0.63 +0.3
402,232 + MPMX26_00369 0.63 -0.7
402,232 + MPMX26_00369 0.63 -1.7
402,244 + MPMX26_00369 0.63 -0.6
402,316 + MPMX26_00369 0.67 +0.1
402,316 + MPMX26_00369 0.67 +0.3
402,316 + MPMX26_00369 0.67 +0.4
402,388 + MPMX26_00369 0.71 +1.6
402,456 + MPMX26_00369 0.74 -1.1
402,456 + MPMX26_00369 0.74 +0.1
402,456 + MPMX26_00369 0.74 -0.5
402,456 + MPMX26_00369 0.74 +0.2
402,456 + MPMX26_00369 0.74 +0.6
402,456 + MPMX26_00369 0.74 +0.1
402,456 + MPMX26_00369 0.74 +0.1
402,463 + MPMX26_00369 0.75 -0.2
402,473 + MPMX26_00369 0.75 +0.2
402,483 + MPMX26_00369 0.76 -0.7
402,505 + MPMX26_00369 0.77 -0.2
402,536 + MPMX26_00369 0.78 +0.7
402,570 + MPMX26_00369 0.80 -0.1
402,570 + MPMX26_00369 0.80 +0.2
402,570 + MPMX26_00369 0.80 +0.1
402,570 + MPMX26_00369 0.80 +0.0
402,570 + MPMX26_00369 0.80 -0.5
402,570 + MPMX26_00369 0.80 +1.0
402,570 + MPMX26_00369 0.80 -0.3
402,570 + MPMX26_00369 0.80 +0.1
402,580 + MPMX26_00369 0.80 -0.3
402,585 + MPMX26_00369 0.81 +0.1
402,595 + MPMX26_00369 0.81 -0.4
402,615 + MPMX26_00369 0.82 +1.6
402,616 + MPMX26_00369 0.82 +0.0
402,616 + MPMX26_00369 0.82 +0.5
402,618 + MPMX26_00369 0.82 +0.6
402,637 + MPMX26_00369 0.83 +0.0
402,680 + MPMX26_00369 0.86 +1.5
402,680 + MPMX26_00369 0.86 +1.3
402,688 - MPMX26_00369 0.86 +0.1
402,690 + MPMX26_00369 0.86 -1.0
402,690 + MPMX26_00369 0.86 +0.4
402,690 + MPMX26_00369 0.86 -1.8
402,705 + MPMX26_00369 0.87 -0.4
402,705 + MPMX26_00369 0.87 +1.3
402,713 - MPMX26_00369 0.87 +2.9
402,724 + MPMX26_00369 0.88 +0.2
402,736 + MPMX26_00369 0.88 +0.2
402,736 + MPMX26_00369 0.88 -0.1
402,772 + +0.3
402,788 + +0.3
402,871 + -0.4
402,979 + -0.2
403,006 + +0.6
403,006 + -0.4
403,006 + +0.6
403,006 + +0.5
403,006 + +1.4
403,006 + +0.4
403,021 + +0.1
403,073 + +0.4
403,073 + -0.2
403,083 + MPMX26_00370 0.12 +0.5
403,104 + MPMX26_00370 0.20 +0.1
403,113 + MPMX26_00370 0.23 +1.1
403,113 + MPMX26_00370 0.23 -0.3
403,113 + MPMX26_00370 0.23 +0.3
403,113 + MPMX26_00370 0.23 -0.3
403,113 + MPMX26_00370 0.23 +0.3
403,113 + MPMX26_00370 0.23 +0.5
403,113 + MPMX26_00370 0.23 +0.7
403,113 + MPMX26_00370 0.23 +0.6
403,113 + MPMX26_00370 0.23 -1.2
403,113 + MPMX26_00370 0.23 +0.2
403,113 + MPMX26_00370 0.23 +1.2
403,113 + MPMX26_00370 0.23 -0.7
403,113 + MPMX26_00370 0.23 +0.2
403,120 + MPMX26_00370 0.26 -0.9
403,121 - MPMX26_00370 0.27 +0.0
403,127 + MPMX26_00370 0.29 -1.3
403,131 + MPMX26_00370 0.31 -0.9
403,136 + MPMX26_00370 0.33 -0.3
403,145 + MPMX26_00370 0.36 +0.1
403,145 + MPMX26_00370 0.36 -1.0
403,173 + MPMX26_00370 0.47 +1.1
403,173 + MPMX26_00370 0.47 -0.1
403,173 + MPMX26_00370 0.47 +0.7
403,173 + MPMX26_00370 0.47 -0.3
403,173 + MPMX26_00370 0.47 -0.3
403,173 + MPMX26_00370 0.47 +0.2
403,234 + MPMX26_00370 0.71 -0.4
403,236 + MPMX26_00370 0.72 +0.2
403,236 + MPMX26_00370 0.72 +0.7
403,236 + MPMX26_00370 0.72 +0.6
403,236 + MPMX26_00370 0.72 -0.6
403,236 + MPMX26_00370 0.72 +0.4
403,236 + MPMX26_00370 0.72 -1.0
403,237 + MPMX26_00370 0.73 +1.1
403,237 + MPMX26_00370 0.73 -0.2
403,237 + MPMX26_00370 0.73 +0.0
403,244 + MPMX26_00370 0.75 +0.2
403,244 + MPMX26_00370 0.75 -0.6
403,259 + MPMX26_00370 0.81 +1.6
403,272 + MPMX26_00370 0.87 -0.4
403,293 + -0.3
403,293 + +0.7
403,299 + -0.6
403,319 + +0.8
403,570 + -0.2
403,577 + -0.7
403,585 + -1.4
403,585 + +0.3
403,625 + MPMX26_00371 0.11 +0.9
403,625 + MPMX26_00371 0.11 +0.4
403,663 + MPMX26_00371 0.19 -0.2
403,669 + MPMX26_00371 0.20 -0.0
403,669 + MPMX26_00371 0.20 -0.3
403,675 + MPMX26_00371 0.21 +0.5
403,691 + MPMX26_00371 0.24 +0.1
403,691 + MPMX26_00371 0.24 +1.3
403,772 + MPMX26_00371 0.40 -0.9
403,772 + MPMX26_00371 0.40 -0.4
403,818 + MPMX26_00371 0.50 +0.9
403,846 + MPMX26_00371 0.55 +1.0
403,879 + MPMX26_00371 0.62 -1.1
403,909 + MPMX26_00371 0.68 -0.1
404,016 + MPMX26_00371 0.89 +0.7
404,021 + -1.2
404,065 + +0.1
404,078 + +0.8
404,138 + -0.2
404,139 + -0.3
404,158 + +0.3
404,173 + +0.1
404,182 + -0.2
404,182 + -0.6
404,182 + -0.0
404,182 + -0.6
404,182 + -0.0
404,182 + +0.8
404,213 + MPMX26_00372 0.13 -0.3
404,223 + MPMX26_00372 0.16 +1.4
404,230 + MPMX26_00372 0.19 +0.2
404,240 + MPMX26_00372 0.22 -0.6
404,240 + MPMX26_00372 0.22 +0.0
404,240 + MPMX26_00372 0.22 -0.7
404,240 + MPMX26_00372 0.22 -1.1
404,240 + MPMX26_00372 0.22 -0.2
404,240 + MPMX26_00372 0.22 -0.2
404,240 + MPMX26_00372 0.22 -0.1
404,240 + MPMX26_00372 0.22 -0.2
404,240 + MPMX26_00372 0.22 +0.2
404,240 + MPMX26_00372 0.22 +0.0
404,240 + MPMX26_00372 0.22 +0.0
404,240 + MPMX26_00372 0.22 +2.3
404,259 + MPMX26_00372 0.29 +0.7
404,259 + MPMX26_00372 0.29 -0.8
404,264 + MPMX26_00372 0.31 -0.3
404,264 + MPMX26_00372 0.31 -0.1

Or see this region's nucleotide sequence