Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00087

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00085 and MPMX26_00086 are separated by 90 nucleotidesMPMX26_00086 and MPMX26_00087 are separated by 91 nucleotidesMPMX26_00087 and MPMX26_00088 are separated by 223 nucleotides MPMX26_00085: MPMX26_00085 - hypothetical protein, at 96,245 to 97,153 _00085 MPMX26_00086: MPMX26_00086 - hypothetical protein, at 97,244 to 97,744 _00086 MPMX26_00087: MPMX26_00087 - hypothetical protein, at 97,836 to 98,765 _00087 MPMX26_00088: MPMX26_00088 - hypothetical protein, at 98,989 to 99,642 _00088 Position (kb) 97 98 99Strain fitness (log2 ratio) -1 0 1 2at 97.478 kb on + strand, within MPMX26_00086at 97.927 kb on + strandat 98.031 kb on - strand, within MPMX26_00087at 98.621 kb on + strand, within MPMX26_00087at 98.621 kb on + strand, within MPMX26_00087at 98.621 kb on + strand, within MPMX26_00087at 98.911 kb on + strandat 98.919 kb on - strandat 99.036 kb on + strandat 99.046 kb on + strandat 99.281 kb on + strand, within MPMX26_00088at 99.394 kb on + strand, within MPMX26_00088at 99.582 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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97,478 + MPMX26_00086 0.47 -0.2
97,927 + +2.4
98,031 - MPMX26_00087 0.21 -0.8
98,621 + MPMX26_00087 0.84 -0.1
98,621 + MPMX26_00087 0.84 +2.3
98,621 + MPMX26_00087 0.84 -1.0
98,911 + -0.5
98,919 - -1.7
99,036 + -0.1
99,046 + +1.7
99,281 + MPMX26_00088 0.45 +0.7
99,394 + MPMX26_00088 0.62 +2.5
99,582 + +0.1

Or see this region's nucleotide sequence