Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00042

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00041 and MPMX26_00042 are separated by 506 nucleotidesMPMX26_00042 and MPMX26_00043 are separated by 145 nucleotidesMPMX26_00043 and MPMX26_00044 are separated by 69 nucleotides MPMX26_00041: MPMX26_00041 - Non-hemolytic phospholipase C, at 43,065 to 45,227 _00041 MPMX26_00042: MPMX26_00042 - Nicotinate-nucleotide pyrophosphorylase [carboxylating], at 45,734 to 46,579 _00042 MPMX26_00043: MPMX26_00043 - 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD, at 46,725 to 47,303 _00043 MPMX26_00044: MPMX26_00044 - putative lipid II flippase MurJ, at 47,373 to 48,914 _00044 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2 3at 44.827 kb on + strand, within MPMX26_00041at 44.827 kb on + strand, within MPMX26_00041at 44.827 kb on + strand, within MPMX26_00041at 44.840 kb on - strand, within MPMX26_00041at 44.840 kb on - strand, within MPMX26_00041at 44.862 kb on - strand, within MPMX26_00041at 44.947 kb on + strand, within MPMX26_00041at 44.955 kb on - strand, within MPMX26_00041at 44.955 kb on - strand, within MPMX26_00041at 45.163 kb on + strandat 45.173 kb on + strandat 45.173 kb on + strandat 45.173 kb on + strandat 45.173 kb on + strandat 45.173 kb on + strandat 45.222 kb on + strandat 45.331 kb on - strandat 45.361 kb on - strandat 45.669 kb on + strandat 45.675 kb on + strandat 45.675 kb on + strandat 45.694 kb on + strandat 45.723 kb on - strandat 45.731 kb on + strandat 45.731 kb on + strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.739 kb on - strandat 45.765 kb on + strandat 45.782 kb on - strandat 45.803 kb on + strandat 45.853 kb on - strand, within MPMX26_00042at 45.859 kb on - strand, within MPMX26_00042at 45.892 kb on - strand, within MPMX26_00042at 45.892 kb on - strand, within MPMX26_00042at 45.920 kb on - strand, within MPMX26_00042at 45.926 kb on - strand, within MPMX26_00042at 45.940 kb on - strand, within MPMX26_00042at 45.946 kb on - strand, within MPMX26_00042at 45.950 kb on + strand, within MPMX26_00042at 45.969 kb on - strand, within MPMX26_00042at 45.977 kb on + strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.985 kb on - strand, within MPMX26_00042at 45.999 kb on + strand, within MPMX26_00042at 46.006 kb on - strand, within MPMX26_00042at 46.006 kb on - strand, within MPMX26_00042at 46.009 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.016 kb on + strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.017 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.024 kb on - strand, within MPMX26_00042at 46.039 kb on + strand, within MPMX26_00042at 46.042 kb on - strand, within MPMX26_00042at 46.042 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.047 kb on - strand, within MPMX26_00042at 46.086 kb on + strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.094 kb on - strand, within MPMX26_00042at 46.096 kb on + strand, within MPMX26_00042at 46.104 kb on - strand, within MPMX26_00042at 46.124 kb on - strand, within MPMX26_00042at 46.132 kb on - strand, within MPMX26_00042at 46.142 kb on - strand, within MPMX26_00042at 46.150 kb on + strand, within MPMX26_00042at 46.164 kb on - strand, within MPMX26_00042at 46.165 kb on - strand, within MPMX26_00042at 46.169 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.175 kb on - strand, within MPMX26_00042at 46.221 kb on - strand, within MPMX26_00042at 46.240 kb on - strand, within MPMX26_00042at 46.240 kb on - strand, within MPMX26_00042at 46.262 kb on + strand, within MPMX26_00042at 46.262 kb on + strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.270 kb on - strand, within MPMX26_00042at 46.276 kb on + strand, within MPMX26_00042at 46.276 kb on + strand, within MPMX26_00042at 46.282 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.284 kb on - strand, within MPMX26_00042at 46.293 kb on - strand, within MPMX26_00042at 46.310 kb on - strand, within MPMX26_00042at 46.341 kb on - strand, within MPMX26_00042at 46.368 kb on + strand, within MPMX26_00042at 46.376 kb on - strand, within MPMX26_00042at 46.382 kb on - strand, within MPMX26_00042at 46.397 kb on - strand, within MPMX26_00042at 46.397 kb on - strand, within MPMX26_00042at 46.401 kb on - strand, within MPMX26_00042at 46.403 kb on + strand, within MPMX26_00042at 46.412 kb on + strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.415 kb on - strand, within MPMX26_00042at 46.417 kb on + strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.420 kb on - strand, within MPMX26_00042at 46.425 kb on - strand, within MPMX26_00042at 46.425 kb on - strand, within MPMX26_00042at 46.434 kb on - strand, within MPMX26_00042at 46.435 kb on + strand, within MPMX26_00042at 46.488 kb on + strand, within MPMX26_00042at 46.496 kb on - strandat 46.498 kb on + strandat 46.501 kb on - strandat 46.514 kb on - strandat 46.536 kb on - strandat 46.559 kb on - strandat 46.560 kb on - strandat 46.599 kb on - strandat 46.629 kb on - strandat 46.630 kb on - strandat 46.630 kb on - strandat 46.637 kb on + strandat 46.737 kb on + strandat 46.776 kb on + strandat 46.781 kb on + strandat 46.781 kb on + strandat 46.846 kb on + strand, within MPMX26_00043at 46.847 kb on + strand, within MPMX26_00043at 46.868 kb on + strand, within MPMX26_00043at 46.877 kb on + strand, within MPMX26_00043at 46.884 kb on + strand, within MPMX26_00043at 46.940 kb on + strand, within MPMX26_00043at 46.950 kb on + strand, within MPMX26_00043at 46.950 kb on + strand, within MPMX26_00043at 46.955 kb on + strand, within MPMX26_00043at 46.955 kb on + strand, within MPMX26_00043at 46.974 kb on + strand, within MPMX26_00043at 46.979 kb on + strand, within MPMX26_00043at 46.979 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 46.992 kb on + strand, within MPMX26_00043at 47.046 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.051 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.056 kb on + strand, within MPMX26_00043at 47.063 kb on + strand, within MPMX26_00043at 47.147 kb on + strand, within MPMX26_00043at 47.157 kb on + strand, within MPMX26_00043at 47.168 kb on + strand, within MPMX26_00043at 47.168 kb on + strand, within MPMX26_00043at 47.244 kb on + strand, within MPMX26_00043

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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44,827 + MPMX26_00041 0.81 -0.6
44,827 + MPMX26_00041 0.81 +1.3
44,827 + MPMX26_00041 0.81 +0.6
44,840 - MPMX26_00041 0.82 -0.1
44,840 - MPMX26_00041 0.82 +2.3
44,862 - MPMX26_00041 0.83 +0.9
44,947 + MPMX26_00041 0.87 +0.3
44,955 - MPMX26_00041 0.87 +2.8
44,955 - MPMX26_00041 0.87 +0.9
45,163 + +0.4
45,173 + +1.3
45,173 + +1.5
45,173 + +0.1
45,173 + -0.6
45,173 + -0.4
45,222 + +1.3
45,331 - -0.1
45,361 - -0.7
45,669 + +0.1
45,675 + +0.2
45,675 + -0.2
45,694 + +0.6
45,723 - -0.6
45,731 + -0.8
45,731 + -0.9
45,739 - -0.1
45,739 - +0.5
45,739 - -0.3
45,739 - +0.4
45,765 + +0.7
45,782 - +1.7
45,803 + +0.9
45,853 - MPMX26_00042 0.14 +0.4
45,859 - MPMX26_00042 0.15 +1.3
45,892 - MPMX26_00042 0.19 -2.2
45,892 - MPMX26_00042 0.19 -0.3
45,920 - MPMX26_00042 0.22 +0.5
45,926 - MPMX26_00042 0.23 -0.1
45,940 - MPMX26_00042 0.24 -0.6
45,946 - MPMX26_00042 0.25 -0.5
45,950 + MPMX26_00042 0.26 +0.7
45,969 - MPMX26_00042 0.28 -0.9
45,977 + MPMX26_00042 0.29 +0.2
45,985 - MPMX26_00042 0.30 +1.3
45,985 - MPMX26_00042 0.30 -2.0
45,985 - MPMX26_00042 0.30 -1.0
45,999 + MPMX26_00042 0.31 -1.2
46,006 - MPMX26_00042 0.32 -0.1
46,006 - MPMX26_00042 0.32 +0.2
46,009 + MPMX26_00042 0.33 +0.6
46,016 + MPMX26_00042 0.33 -0.9
46,016 + MPMX26_00042 0.33 +0.1
46,016 + MPMX26_00042 0.33 +0.4
46,017 - MPMX26_00042 0.33 +0.9
46,017 - MPMX26_00042 0.33 -0.6
46,017 - MPMX26_00042 0.33 -0.2
46,017 - MPMX26_00042 0.33 -0.4
46,024 - MPMX26_00042 0.34 -0.7
46,024 - MPMX26_00042 0.34 +0.9
46,024 - MPMX26_00042 0.34 -1.0
46,039 + MPMX26_00042 0.36 -0.1
46,042 - MPMX26_00042 0.36 -2.4
46,042 - MPMX26_00042 0.36 +0.2
46,047 - MPMX26_00042 0.37 -0.6
46,047 - MPMX26_00042 0.37 -0.9
46,047 - MPMX26_00042 0.37 +0.5
46,086 + MPMX26_00042 0.42 -0.9
46,094 - MPMX26_00042 0.43 +0.4
46,094 - MPMX26_00042 0.43 +0.1
46,094 - MPMX26_00042 0.43 -0.5
46,094 - MPMX26_00042 0.43 -1.2
46,096 + MPMX26_00042 0.43 -0.1
46,104 - MPMX26_00042 0.44 -1.1
46,124 - MPMX26_00042 0.46 +0.7
46,132 - MPMX26_00042 0.47 -1.4
46,142 - MPMX26_00042 0.48 -0.7
46,150 + MPMX26_00042 0.49 +0.1
46,164 - MPMX26_00042 0.51 -1.1
46,165 - MPMX26_00042 0.51 -0.6
46,169 - MPMX26_00042 0.51 +1.3
46,175 - MPMX26_00042 0.52 -0.9
46,175 - MPMX26_00042 0.52 -2.5
46,175 - MPMX26_00042 0.52 -0.2
46,221 - MPMX26_00042 0.58 -0.4
46,240 - MPMX26_00042 0.60 -0.8
46,240 - MPMX26_00042 0.60 -0.8
46,262 + MPMX26_00042 0.62 +0.6
46,262 + MPMX26_00042 0.62 +1.3
46,270 - MPMX26_00042 0.63 -1.7
46,270 - MPMX26_00042 0.63 -0.3
46,270 - MPMX26_00042 0.63 -0.1
46,270 - MPMX26_00042 0.63 -0.2
46,270 - MPMX26_00042 0.63 -0.5
46,276 + MPMX26_00042 0.64 -1.1
46,276 + MPMX26_00042 0.64 +0.1
46,282 - MPMX26_00042 0.65 -0.6
46,284 - MPMX26_00042 0.65 -0.5
46,284 - MPMX26_00042 0.65 -0.0
46,284 - MPMX26_00042 0.65 +0.0
46,284 - MPMX26_00042 0.65 -1.0
46,293 - MPMX26_00042 0.66 +0.1
46,310 - MPMX26_00042 0.68 -0.5
46,341 - MPMX26_00042 0.72 -0.6
46,368 + MPMX26_00042 0.75 +1.0
46,376 - MPMX26_00042 0.76 +0.2
46,382 - MPMX26_00042 0.77 +0.1
46,397 - MPMX26_00042 0.78 -1.1
46,397 - MPMX26_00042 0.78 -0.1
46,401 - MPMX26_00042 0.79 -0.7
46,403 + MPMX26_00042 0.79 +0.6
46,412 + MPMX26_00042 0.80 +0.9
46,415 - MPMX26_00042 0.80 -0.8
46,415 - MPMX26_00042 0.80 +0.8
46,415 - MPMX26_00042 0.80 +0.0
46,417 + MPMX26_00042 0.81 -0.6
46,420 - MPMX26_00042 0.81 +0.7
46,420 - MPMX26_00042 0.81 -0.5
46,420 - MPMX26_00042 0.81 -0.5
46,420 - MPMX26_00042 0.81 -0.7
46,420 - MPMX26_00042 0.81 -0.4
46,425 - MPMX26_00042 0.82 -0.6
46,425 - MPMX26_00042 0.82 -0.1
46,434 - MPMX26_00042 0.83 -1.8
46,435 + MPMX26_00042 0.83 +0.5
46,488 + MPMX26_00042 0.89 -1.0
46,496 - +0.4
46,498 + +0.9
46,501 - -0.5
46,514 - -1.4
46,536 - +0.3
46,559 - -0.6
46,560 - +0.8
46,599 - -0.5
46,629 - -1.6
46,630 - -0.4
46,630 - +0.4
46,637 + -0.6
46,737 + -0.6
46,776 + -0.1
46,781 + -0.9
46,781 + -1.4
46,846 + MPMX26_00043 0.21 +1.7
46,847 + MPMX26_00043 0.21 -1.0
46,868 + MPMX26_00043 0.25 -1.6
46,877 + MPMX26_00043 0.26 -1.8
46,884 + MPMX26_00043 0.27 -1.1
46,940 + MPMX26_00043 0.37 -0.2
46,950 + MPMX26_00043 0.39 +0.2
46,950 + MPMX26_00043 0.39 -0.6
46,955 + MPMX26_00043 0.40 -0.1
46,955 + MPMX26_00043 0.40 +0.9
46,974 + MPMX26_00043 0.43 +0.9
46,979 + MPMX26_00043 0.44 -0.8
46,979 + MPMX26_00043 0.44 -1.4
46,992 + MPMX26_00043 0.46 -0.9
46,992 + MPMX26_00043 0.46 -0.4
46,992 + MPMX26_00043 0.46 -1.6
46,992 + MPMX26_00043 0.46 -0.4
46,992 + MPMX26_00043 0.46 +0.9
47,046 + MPMX26_00043 0.55 +0.9
47,051 + MPMX26_00043 0.56 +1.4
47,051 + MPMX26_00043 0.56 -0.4
47,051 + MPMX26_00043 0.56 -0.1
47,051 + MPMX26_00043 0.56 -0.1
47,051 + MPMX26_00043 0.56 -0.3
47,056 + MPMX26_00043 0.57 +1.9
47,056 + MPMX26_00043 0.57 +0.1
47,056 + MPMX26_00043 0.57 +1.3
47,063 + MPMX26_00043 0.58 -0.3
47,147 + MPMX26_00043 0.73 -0.9
47,157 + MPMX26_00043 0.75 +0.1
47,168 + MPMX26_00043 0.77 +0.7
47,168 + MPMX26_00043 0.77 +0.3
47,244 + MPMX26_00043 0.90 +2.6

Or see this region's nucleotide sequence