Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00030

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00029 and MPMX26_00030 are separated by 126 nucleotidesMPMX26_00030 and MPMX26_00031 are separated by 224 nucleotidesMPMX26_00031 and MPMX26_00032 are separated by 341 nucleotides MPMX26_00029: MPMX26_00029 - Amino-acid acetyltransferase, at 32,352 to 33,698 _00029 MPMX26_00030: MPMX26_00030 - hypothetical protein, at 33,825 to 34,178 _00030 MPMX26_00031: MPMX26_00031 - hypothetical protein, at 34,403 to 34,780 _00031 MPMX26_00032: MPMX26_00032 - putative oxidoreductase YciK, at 35,122 to 35,868 _00032 Position (kb) 33 34 35Strain fitness (log2 ratio) -2 -1 0 1 2 3at 32.855 kb on - strand, within MPMX26_00029at 32.880 kb on - strand, within MPMX26_00029at 32.880 kb on - strand, within MPMX26_00029at 32.880 kb on - strand, within MPMX26_00029at 32.880 kb on - strand, within MPMX26_00029at 32.882 kb on - strand, within MPMX26_00029at 32.921 kb on - strand, within MPMX26_00029at 32.962 kb on - strand, within MPMX26_00029at 32.986 kb on - strand, within MPMX26_00029at 32.986 kb on - strand, within MPMX26_00029at 32.986 kb on - strand, within MPMX26_00029at 32.986 kb on - strand, within MPMX26_00029at 32.986 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.991 kb on - strand, within MPMX26_00029at 32.997 kb on - strand, within MPMX26_00029at 32.997 kb on - strand, within MPMX26_00029at 32.999 kb on - strand, within MPMX26_00029at 33.005 kb on - strand, within MPMX26_00029at 33.012 kb on - strand, within MPMX26_00029at 33.044 kb on - strand, within MPMX26_00029at 33.105 kb on - strand, within MPMX26_00029at 33.120 kb on - strand, within MPMX26_00029at 33.123 kb on - strand, within MPMX26_00029at 33.134 kb on - strand, within MPMX26_00029at 33.150 kb on - strand, within MPMX26_00029at 33.150 kb on - strand, within MPMX26_00029at 33.153 kb on - strand, within MPMX26_00029at 33.153 kb on - strand, within MPMX26_00029at 33.153 kb on - strand, within MPMX26_00029at 33.153 kb on - strand, within MPMX26_00029at 33.155 kb on - strand, within MPMX26_00029at 33.155 kb on - strand, within MPMX26_00029at 33.168 kb on - strand, within MPMX26_00029at 33.173 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.178 kb on - strand, within MPMX26_00029at 33.220 kb on - strand, within MPMX26_00029at 33.220 kb on - strand, within MPMX26_00029at 33.220 kb on - strand, within MPMX26_00029at 33.220 kb on - strand, within MPMX26_00029at 33.223 kb on - strand, within MPMX26_00029at 33.223 kb on - strand, within MPMX26_00029at 33.247 kb on - strand, within MPMX26_00029at 33.265 kb on - strand, within MPMX26_00029at 33.272 kb on - strand, within MPMX26_00029at 33.273 kb on - strand, within MPMX26_00029at 33.273 kb on - strand, within MPMX26_00029at 33.279 kb on - strand, within MPMX26_00029at 33.280 kb on - strand, within MPMX26_00029at 33.309 kb on - strand, within MPMX26_00029at 33.311 kb on - strand, within MPMX26_00029at 33.323 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.326 kb on - strand, within MPMX26_00029at 33.395 kb on - strand, within MPMX26_00029at 33.407 kb on - strand, within MPMX26_00029at 33.423 kb on - strand, within MPMX26_00029at 33.493 kb on - strand, within MPMX26_00029at 33.501 kb on - strand, within MPMX26_00029at 33.506 kb on - strand, within MPMX26_00029at 33.506 kb on - strand, within MPMX26_00029at 33.531 kb on - strand, within MPMX26_00029at 33.531 kb on - strand, within MPMX26_00029at 33.536 kb on - strand, within MPMX26_00029at 33.541 kb on - strand, within MPMX26_00029at 33.541 kb on - strand, within MPMX26_00029at 33.541 kb on - strand, within MPMX26_00029at 33.541 kb on - strand, within MPMX26_00029at 33.580 kb on - strandat 33.583 kb on + strandat 33.591 kb on - strandat 33.611 kb on - strandat 33.632 kb on - strandat 33.641 kb on + strandat 33.668 kb on - strandat 33.673 kb on - strandat 33.673 kb on - strandat 33.673 kb on - strandat 33.790 kb on + strandat 33.797 kb on + strandat 33.798 kb on - strandat 33.798 kb on - strandat 33.817 kb on + strandat 33.820 kb on - strandat 33.872 kb on - strand, within MPMX26_00030at 33.872 kb on - strand, within MPMX26_00030at 33.904 kb on - strand, within MPMX26_00030at 33.913 kb on + strand, within MPMX26_00030at 33.947 kb on - strand, within MPMX26_00030at 33.957 kb on + strand, within MPMX26_00030at 33.983 kb on + strand, within MPMX26_00030at 33.983 kb on - strand, within MPMX26_00030at 33.988 kb on + strand, within MPMX26_00030at 33.989 kb on - strand, within MPMX26_00030at 34.060 kb on - strand, within MPMX26_00030at 34.080 kb on - strand, within MPMX26_00030at 34.080 kb on - strand, within MPMX26_00030at 34.080 kb on - strand, within MPMX26_00030at 34.083 kb on + strand, within MPMX26_00030at 34.102 kb on - strand, within MPMX26_00030at 34.134 kb on - strand, within MPMX26_00030at 34.200 kb on - strandat 34.359 kb on - strandat 34.402 kb on - strandat 34.404 kb on - strandat 35.033 kb on - strandat 35.067 kb on - strandat 35.076 kb on - strandat 35.086 kb on - strandat 35.143 kb on - strandat 35.143 kb on - strandat 35.143 kb on - strandat 35.143 kb on - strandat 35.151 kb on - strandat 35.172 kb on - strandat 35.172 kb on - strandat 35.172 kb on - strandat 35.172 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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32,855 - MPMX26_00029 0.37 -0.0
32,880 - MPMX26_00029 0.39 -0.4
32,880 - MPMX26_00029 0.39 -0.3
32,880 - MPMX26_00029 0.39 -0.6
32,880 - MPMX26_00029 0.39 +0.5
32,882 - MPMX26_00029 0.39 +0.6
32,921 - MPMX26_00029 0.42 -1.5
32,962 - MPMX26_00029 0.45 -0.8
32,986 - MPMX26_00029 0.47 +1.3
32,986 - MPMX26_00029 0.47 -0.2
32,986 - MPMX26_00029 0.47 +0.1
32,986 - MPMX26_00029 0.47 +0.9
32,986 - MPMX26_00029 0.47 +2.9
32,991 - MPMX26_00029 0.47 +0.3
32,991 - MPMX26_00029 0.47 +0.1
32,991 - MPMX26_00029 0.47 +0.0
32,991 - MPMX26_00029 0.47 -0.8
32,991 - MPMX26_00029 0.47 -0.8
32,991 - MPMX26_00029 0.47 -0.1
32,991 - MPMX26_00029 0.47 +0.6
32,991 - MPMX26_00029 0.47 +0.4
32,991 - MPMX26_00029 0.47 +0.1
32,991 - MPMX26_00029 0.47 -0.5
32,991 - MPMX26_00029 0.47 +0.5
32,997 - MPMX26_00029 0.48 +0.9
32,997 - MPMX26_00029 0.48 -0.3
32,999 - MPMX26_00029 0.48 +0.1
33,005 - MPMX26_00029 0.48 +1.5
33,012 - MPMX26_00029 0.49 -0.3
33,044 - MPMX26_00029 0.51 +3.5
33,105 - MPMX26_00029 0.56 +1.1
33,120 - MPMX26_00029 0.57 +0.2
33,123 - MPMX26_00029 0.57 +0.6
33,134 - MPMX26_00029 0.58 +1.3
33,150 - MPMX26_00029 0.59 -0.9
33,150 - MPMX26_00029 0.59 +0.6
33,153 - MPMX26_00029 0.59 -0.1
33,153 - MPMX26_00029 0.59 -0.0
33,153 - MPMX26_00029 0.59 +0.8
33,153 - MPMX26_00029 0.59 -1.4
33,155 - MPMX26_00029 0.60 -0.3
33,155 - MPMX26_00029 0.60 -1.1
33,168 - MPMX26_00029 0.61 -1.0
33,173 - MPMX26_00029 0.61 -0.3
33,178 - MPMX26_00029 0.61 +0.6
33,178 - MPMX26_00029 0.61 -2.2
33,178 - MPMX26_00029 0.61 -0.4
33,178 - MPMX26_00029 0.61 -1.3
33,178 - MPMX26_00029 0.61 -0.4
33,178 - MPMX26_00029 0.61 +1.8
33,220 - MPMX26_00029 0.64 -0.4
33,220 - MPMX26_00029 0.64 +2.3
33,220 - MPMX26_00029 0.64 -0.2
33,220 - MPMX26_00029 0.64 +0.6
33,223 - MPMX26_00029 0.65 +0.7
33,223 - MPMX26_00029 0.65 +1.9
33,247 - MPMX26_00029 0.66 -1.9
33,265 - MPMX26_00029 0.68 +0.4
33,272 - MPMX26_00029 0.68 +0.0
33,273 - MPMX26_00029 0.68 -0.2
33,273 - MPMX26_00029 0.68 +0.1
33,279 - MPMX26_00029 0.69 +1.0
33,280 - MPMX26_00029 0.69 +0.8
33,309 - MPMX26_00029 0.71 -0.6
33,311 - MPMX26_00029 0.71 +0.5
33,323 - MPMX26_00029 0.72 +0.6
33,326 - MPMX26_00029 0.72 -0.4
33,326 - MPMX26_00029 0.72 +1.2
33,326 - MPMX26_00029 0.72 -0.1
33,326 - MPMX26_00029 0.72 -0.4
33,326 - MPMX26_00029 0.72 +0.2
33,326 - MPMX26_00029 0.72 -0.5
33,326 - MPMX26_00029 0.72 +0.2
33,326 - MPMX26_00029 0.72 -1.7
33,326 - MPMX26_00029 0.72 +1.2
33,326 - MPMX26_00029 0.72 -1.0
33,395 - MPMX26_00029 0.77 +0.5
33,407 - MPMX26_00029 0.78 +0.2
33,423 - MPMX26_00029 0.80 -0.7
33,493 - MPMX26_00029 0.85 -0.1
33,501 - MPMX26_00029 0.85 -0.5
33,506 - MPMX26_00029 0.86 +1.9
33,506 - MPMX26_00029 0.86 -0.6
33,531 - MPMX26_00029 0.88 +0.9
33,531 - MPMX26_00029 0.88 +0.1
33,536 - MPMX26_00029 0.88 -1.0
33,541 - MPMX26_00029 0.88 +1.9
33,541 - MPMX26_00029 0.88 +1.1
33,541 - MPMX26_00029 0.88 +0.0
33,541 - MPMX26_00029 0.88 +0.2
33,580 - -0.2
33,583 + +1.3
33,591 - +0.1
33,611 - -0.4
33,632 - +0.7
33,641 + -1.2
33,668 - +0.0
33,673 - +0.4
33,673 - -1.6
33,673 - +1.5
33,790 + +2.9
33,797 + +1.3
33,798 - +0.2
33,798 - +0.5
33,817 + +0.3
33,820 - +0.2
33,872 - MPMX26_00030 0.13 -0.3
33,872 - MPMX26_00030 0.13 -0.4
33,904 - MPMX26_00030 0.22 +1.5
33,913 + MPMX26_00030 0.25 -0.7
33,947 - MPMX26_00030 0.34 +0.6
33,957 + MPMX26_00030 0.37 +0.9
33,983 + MPMX26_00030 0.45 +1.9
33,983 - MPMX26_00030 0.45 -1.0
33,988 + MPMX26_00030 0.46 -0.4
33,989 - MPMX26_00030 0.46 +1.6
34,060 - MPMX26_00030 0.66 +0.2
34,080 - MPMX26_00030 0.72 +1.0
34,080 - MPMX26_00030 0.72 +0.4
34,080 - MPMX26_00030 0.72 -0.1
34,083 + MPMX26_00030 0.73 +1.5
34,102 - MPMX26_00030 0.78 -0.7
34,134 - MPMX26_00030 0.87 -1.4
34,200 - +1.5
34,359 - -0.6
34,402 - -0.1
34,404 - -1.6
35,033 - +1.2
35,067 - +0.6
35,076 - -0.6
35,086 - +1.5
35,143 - -0.2
35,143 - +0.6
35,143 - +1.0
35,143 - +0.4
35,151 - -0.3
35,172 - +0.6
35,172 - +0.3
35,172 - +0.3
35,172 - +0.8

Or see this region's nucleotide sequence