Strain Fitness in Escherichia coli ECRC98 around JDDGAC_26170

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntligA and ypeB are separated by 1 nucleotidesypeB and yfeH overlap by 4 nucleotides JDDGAC_26165: ligA - NAD-dependent DNA ligase LigA, at 5,005,292 to 5,007,307 ligA JDDGAC_26170: ypeB - Uncharacterized protein YpeB, at 5,007,309 to 5,007,527 ypeB JDDGAC_26175: yfeH - Putative symporter YfeH, at 5,007,524 to 5,008,522 yfeH Position (kb) 5007 5008Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5007.334 kb on + strand, within ypeBat 5007.334 kb on + strand, within ypeBat 5007.341 kb on + strand, within ypeBat 5007.363 kb on + strand, within ypeBat 5007.363 kb on + strand, within ypeBat 5007.363 kb on + strand, within ypeBat 5007.399 kb on + strand, within ypeBat 5007.399 kb on + strand, within ypeBat 5007.400 kb on - strand, within ypeBat 5007.454 kb on + strand, within ypeBat 5007.455 kb on - strand, within ypeBat 5007.476 kb on + strand, within ypeBat 5007.561 kb on - strandat 5007.583 kb on - strandat 5007.733 kb on + strand, within yfeHat 5007.785 kb on - strand, within yfeHat 5007.789 kb on - strand, within yfeHat 5007.865 kb on + strand, within yfeHat 5007.866 kb on - strand, within yfeHat 5007.896 kb on - strand, within yfeHat 5007.897 kb on + strand, within yfeHat 5007.898 kb on - strand, within yfeHat 5008.021 kb on + strand, within yfeHat 5008.022 kb on - strand, within yfeHat 5008.212 kb on + strand, within yfeHat 5008.227 kb on + strand, within yfeHat 5008.271 kb on + strand, within yfeHat 5008.272 kb on - strand, within yfeHat 5008.348 kb on + strand, within yfeHat 5008.399 kb on + strand, within yfeH

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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5,007,334 + ypeB JDDGAC_26170 0.11 -0.4
5,007,334 + ypeB JDDGAC_26170 0.11 -0.1
5,007,341 + ypeB JDDGAC_26170 0.15 -1.2
5,007,363 + ypeB JDDGAC_26170 0.25 -1.1
5,007,363 + ypeB JDDGAC_26170 0.25 +0.7
5,007,363 + ypeB JDDGAC_26170 0.25 +0.4
5,007,399 + ypeB JDDGAC_26170 0.41 +0.0
5,007,399 + ypeB JDDGAC_26170 0.41 -0.7
5,007,400 - ypeB JDDGAC_26170 0.42 +0.5
5,007,454 + ypeB JDDGAC_26170 0.66 +1.0
5,007,455 - ypeB JDDGAC_26170 0.67 -0.2
5,007,476 + ypeB JDDGAC_26170 0.76 +0.1
5,007,561 - +0.7
5,007,583 - +0.1
5,007,733 + yfeH JDDGAC_26175 0.21 +2.1
5,007,785 - yfeH JDDGAC_26175 0.26 -1.7
5,007,789 - yfeH JDDGAC_26175 0.27 -0.2
5,007,865 + yfeH JDDGAC_26175 0.34 -2.3
5,007,866 - yfeH JDDGAC_26175 0.34 -1.6
5,007,896 - yfeH JDDGAC_26175 0.37 -1.4
5,007,897 + yfeH JDDGAC_26175 0.37 -3.3
5,007,898 - yfeH JDDGAC_26175 0.37 +0.1
5,008,021 + yfeH JDDGAC_26175 0.50 -0.1
5,008,022 - yfeH JDDGAC_26175 0.50 -1.7
5,008,212 + yfeH JDDGAC_26175 0.69 -0.2
5,008,227 + yfeH JDDGAC_26175 0.70 +1.2
5,008,271 + yfeH JDDGAC_26175 0.75 +0.4
5,008,272 - yfeH JDDGAC_26175 0.75 +1.5
5,008,348 + yfeH JDDGAC_26175 0.82 -1.3
5,008,399 + yfeH JDDGAC_26175 0.88 +0.1

Or see this region's nucleotide sequence