Strain Fitness in Escherichia coli ECRC98 around JDDGAC_25960

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmaeB and eutS are separated by 292 nucleotideseutS and eutP are separated by 12 nucleotideseutP and eutQ overlap by 26 nucleotideseutQ and eutT overlap by 4 nucleotides JDDGAC_25950: maeB - NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase, at 4,965,346 to 4,967,625 maeB JDDGAC_25955: eutS - Bacterial microcompartment shell protein EutS, at 4,967,918 to 4,968,253 eutS JDDGAC_25960: eutP - ethanolamine utilization acetate kinase EutP, at 4,968,266 to 4,968,745 eutP JDDGAC_25965: eutQ - ethanolamine utilization acetate kinase EutQ, at 4,968,720 to 4,969,421 eutQ JDDGAC_25970: eutT - ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT, at 4,969,418 to 4,970,149 eutT Position (kb) 4968 4969Strain fitness (log2 ratio) -3 -2 -1 0 1at 4967.624 kb on - strandat 4967.686 kb on - strandat 4967.689 kb on - strandat 4968.047 kb on - strand, within eutSat 4968.054 kb on + strand, within eutSat 4968.156 kb on - strand, within eutSat 4968.226 kb on + strandat 4968.254 kb on + strandat 4968.340 kb on + strand, within eutPat 4968.473 kb on + strand, within eutPat 4968.474 kb on - strand, within eutPat 4968.562 kb on + strand, within eutPat 4968.645 kb on + strand, within eutPat 4968.646 kb on - strand, within eutPat 4968.746 kb on + strandat 4968.806 kb on + strand, within eutQat 4968.806 kb on + strand, within eutQat 4968.806 kb on + strand, within eutQat 4968.807 kb on - strand, within eutQat 4968.807 kb on - strand, within eutQat 4968.807 kb on - strand, within eutQat 4968.839 kb on - strand, within eutQat 4968.848 kb on + strand, within eutQat 4968.849 kb on - strand, within eutQat 4969.101 kb on - strand, within eutQat 4969.202 kb on + strand, within eutQat 4969.202 kb on + strand, within eutQat 4969.203 kb on - strand, within eutQat 4969.242 kb on + strand, within eutQat 4969.243 kb on - strand, within eutQat 4969.386 kb on + strandat 4969.386 kb on + strandat 4969.446 kb on + strandat 4969.447 kb on - strandat 4969.447 kb on - strandat 4969.447 kb on - strandat 4969.459 kb on + strandat 4969.631 kb on - strand, within eutT

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,967,624 - +0.4
4,967,686 - -2.7
4,967,689 - +0.6
4,968,047 - eutS JDDGAC_25955 0.38 +0.6
4,968,054 + eutS JDDGAC_25955 0.40 +0.5
4,968,156 - eutS JDDGAC_25955 0.71 -2.9
4,968,226 + +0.2
4,968,254 + +1.0
4,968,340 + eutP JDDGAC_25960 0.15 -0.7
4,968,473 + eutP JDDGAC_25960 0.43 -1.5
4,968,474 - eutP JDDGAC_25960 0.43 +0.6
4,968,562 + eutP JDDGAC_25960 0.62 -0.4
4,968,645 + eutP JDDGAC_25960 0.79 -0.3
4,968,646 - eutP JDDGAC_25960 0.79 +1.1
4,968,746 + +0.7
4,968,806 + eutQ JDDGAC_25965 0.12 +0.5
4,968,806 + eutQ JDDGAC_25965 0.12 +0.0
4,968,806 + eutQ JDDGAC_25965 0.12 +0.3
4,968,807 - eutQ JDDGAC_25965 0.12 -0.5
4,968,807 - eutQ JDDGAC_25965 0.12 -0.5
4,968,807 - eutQ JDDGAC_25965 0.12 -0.4
4,968,839 - eutQ JDDGAC_25965 0.17 -0.7
4,968,848 + eutQ JDDGAC_25965 0.18 -0.2
4,968,849 - eutQ JDDGAC_25965 0.18 +0.4
4,969,101 - eutQ JDDGAC_25965 0.54 -1.6
4,969,202 + eutQ JDDGAC_25965 0.69 +1.0
4,969,202 + eutQ JDDGAC_25965 0.69 -0.0
4,969,203 - eutQ JDDGAC_25965 0.69 -0.0
4,969,242 + eutQ JDDGAC_25965 0.74 -2.0
4,969,243 - eutQ JDDGAC_25965 0.75 +0.9
4,969,386 + -2.7
4,969,386 + +0.2
4,969,446 + -0.1
4,969,447 - -0.1
4,969,447 - +0.1
4,969,447 - +1.3
4,969,459 + +0.5
4,969,631 - eutT JDDGAC_25970 0.29 +0.2

Or see this region's nucleotide sequence