Strain Fitness in Escherichia coli ECRC98 around JDDGAC_24850

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntffh and rpsP are separated by 136 nucleotidesrpsP and rimM are separated by 18 nucleotidesrimM and trmD are separated by 30 nucleotidestrmD and rplS are separated by 41 nucleotidesrplS and yfiB are separated by 76 nucleotidesyfiB and dgcN are separated by 15 nucleotides JDDGAC_24835: ffh - signal recognition particle protein, at 4,751,624 to 4,752,985 ffh JDDGAC_24840: rpsP - 30S ribosomal protein S16, at 4,753,122 to 4,753,370 rpsP JDDGAC_24845: rimM - ribosome maturation factor RimM, at 4,753,389 to 4,753,937 rimM JDDGAC_24850: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,753,968 to 4,754,735 trmD JDDGAC_24855: rplS - 50S ribosomal protein L19, at 4,754,777 to 4,755,124 rplS JDDGAC_24860: yfiB - OmpA family protein, at 4,755,201 to 4,755,683 yfiB JDDGAC_24865: dgcN - diguanylate cyclase DgcN, at 4,755,699 to 4,756,925 dgcN Position (kb) 4753 4754 4755Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4752.983 kb on + strandat 4752.983 kb on + strandat 4752.993 kb on + strandat 4752.994 kb on - strandat 4752.994 kb on - strandat 4753.007 kb on - strandat 4753.007 kb on - strandat 4755.202 kb on + strandat 4755.209 kb on + strandat 4755.210 kb on - strandat 4755.210 kb on - strandat 4755.212 kb on + strandat 4755.213 kb on - strandat 4755.213 kb on - strandat 4755.372 kb on + strand, within yfiBat 4755.373 kb on - strand, within yfiBat 4755.385 kb on + strand, within yfiBat 4755.400 kb on + strand, within yfiBat 4755.400 kb on + strand, within yfiBat 4755.400 kb on + strand, within yfiBat 4755.400 kb on + strand, within yfiBat 4755.423 kb on - strand, within yfiBat 4755.436 kb on - strand, within yfiBat 4755.566 kb on + strand, within yfiBat 4755.639 kb on + strandat 4755.683 kb on + strandat 4755.689 kb on + strandat 4755.691 kb on + strandat 4755.691 kb on + strandat 4755.692 kb on - strandat 4755.692 kb on - strandat 4755.700 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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4,752,983 + -0.1
4,752,983 + +0.5
4,752,993 + +0.9
4,752,994 - -0.5
4,752,994 - +0.1
4,753,007 - -1.4
4,753,007 - +0.1
4,755,202 + +0.0
4,755,209 + +1.2
4,755,210 - -0.7
4,755,210 - +0.2
4,755,212 + +1.4
4,755,213 - +0.8
4,755,213 - -0.4
4,755,372 + yfiB JDDGAC_24860 0.35 +0.1
4,755,373 - yfiB JDDGAC_24860 0.36 -0.6
4,755,385 + yfiB JDDGAC_24860 0.38 -0.5
4,755,400 + yfiB JDDGAC_24860 0.41 +0.2
4,755,400 + yfiB JDDGAC_24860 0.41 +0.1
4,755,400 + yfiB JDDGAC_24860 0.41 +2.1
4,755,400 + yfiB JDDGAC_24860 0.41 +0.5
4,755,423 - yfiB JDDGAC_24860 0.46 +0.5
4,755,436 - yfiB JDDGAC_24860 0.49 +0.5
4,755,566 + yfiB JDDGAC_24860 0.76 -3.6
4,755,639 + -0.6
4,755,683 + -1.4
4,755,689 + +0.6
4,755,691 + -0.5
4,755,691 + -1.7
4,755,692 - +0.7
4,755,692 - +1.0
4,755,700 + -0.0

Or see this region's nucleotide sequence