Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ffh and rpsP are separated by 136 nucleotides rpsP and rimM are separated by 18 nucleotides rimM and trmD are separated by 30 nucleotides trmD and rplS are separated by 41 nucleotides rplS and yfiB are separated by 76 nucleotides yfiB and dgcN are separated by 15 nucleotides
JDDGAC_24835: ffh - signal recognition particle protein, at 4,751,624 to 4,752,985
ffh
JDDGAC_24840: rpsP - 30S ribosomal protein S16, at 4,753,122 to 4,753,370
rpsP
JDDGAC_24845: rimM - ribosome maturation factor RimM, at 4,753,389 to 4,753,937
rimM
JDDGAC_24850: trmD - tRNA (guanosine(37)-N1)-methyltransferase TrmD, at 4,753,968 to 4,754,735
trmD
JDDGAC_24855: rplS - 50S ribosomal protein L19, at 4,754,777 to 4,755,124
rplS
JDDGAC_24860: yfiB - OmpA family protein, at 4,755,201 to 4,755,683
yfiB
JDDGAC_24865: dgcN - diguanylate cyclase DgcN, at 4,755,699 to 4,756,925
dgcN
Position (kb)
4753
4754
4755 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 4752.983 kb on + strand at 4752.983 kb on + strand at 4752.993 kb on + strand at 4752.994 kb on - strand at 4752.994 kb on - strand at 4753.007 kb on - strand at 4753.007 kb on - strand at 4755.202 kb on + strand at 4755.209 kb on + strand at 4755.210 kb on - strand at 4755.210 kb on - strand at 4755.212 kb on + strand at 4755.213 kb on - strand at 4755.213 kb on - strand at 4755.372 kb on + strand, within yfiB at 4755.373 kb on - strand, within yfiB at 4755.385 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.400 kb on + strand, within yfiB at 4755.423 kb on - strand, within yfiB at 4755.436 kb on - strand, within yfiB at 4755.566 kb on + strand, within yfiB at 4755.639 kb on + strand at 4755.683 kb on + strand at 4755.689 kb on + strand at 4755.691 kb on + strand at 4755.691 kb on + strand at 4755.692 kb on - strand at 4755.692 kb on - strand at 4755.700 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,752,983 + -0.1 4,752,983 + +0.5 4,752,993 + +0.9 4,752,994 - -0.5 4,752,994 - +0.1 4,753,007 - -1.4 4,753,007 - +0.1 4,755,202 + +0.0 4,755,209 + +1.2 4,755,210 - -0.7 4,755,210 - +0.2 4,755,212 + +1.4 4,755,213 - +0.8 4,755,213 - -0.4 4,755,372 + yfiB JDDGAC_24860 0.35 +0.1 4,755,373 - yfiB JDDGAC_24860 0.36 -0.6 4,755,385 + yfiB JDDGAC_24860 0.38 -0.5 4,755,400 + yfiB JDDGAC_24860 0.41 +0.2 4,755,400 + yfiB JDDGAC_24860 0.41 +0.1 4,755,400 + yfiB JDDGAC_24860 0.41 +2.1 4,755,400 + yfiB JDDGAC_24860 0.41 +0.5 4,755,423 - yfiB JDDGAC_24860 0.46 +0.5 4,755,436 - yfiB JDDGAC_24860 0.49 +0.5 4,755,566 + yfiB JDDGAC_24860 0.76 -3.6 4,755,639 + -0.6 4,755,683 + -1.4 4,755,689 + +0.6 4,755,691 + -0.5 4,755,691 + -1.7 4,755,692 - +0.7 4,755,692 - +1.0 4,755,700 + -0.0
Or see this region's nucleotide sequence