Strain Fitness in Escherichia coli ECRC98 around JDDGAC_17045

Experiment: Control_ECRC98_WM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntrpoC and rpoB_R687H are separated by 76 nucleotidesrpoB_R687H and rplL are separated by 319 nucleotidesrplL and rplJ are separated by 66 nucleotides JDDGAC_17040: rpoC - DNA-directed RNA polymerase subunit beta', at 3,219,507 to 3,223,730 rpoC JDDGAC_17045: rpoB_R687H - DNA-directed RNA polymerase subunit beta RpoB, at 3,223,807 to 3,227,835 _R687H JDDGAC_17055: rplL - 50S ribosomal protein L7/L12, at 3,228,155 to 3,228,520 rplL JDDGAC_17060: rplJ - 50S ribosomal protein L10, at 3,228,587 to 3,229,084 rplJ Position (kb) 3223 3224 3225 3226 3227 3228Strain fitness (log2 ratio) -3 -2 -1 0 1at 3227.947 kb on - strandat 3228.007 kb on - strandat 3228.007 kb on - strandat 3228.046 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
remove
3,227,947 - +0.3
3,228,007 - -3.0
3,228,007 - -1.1
3,228,046 - -0.4

Or see this region's nucleotide sequence