Strain Fitness in Escherichia coli ECRC98 around JDDGAC_13830

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmap and glnD are separated by 61 nucleotidesglnD and dapD are separated by 30 nucleotides JDDGAC_13825: map - type I methionyl aminopeptidase, at 2,552,991 to 2,553,785 map JDDGAC_13830: glnD - bifunctional uridylyltransferase/uridylyl-removing protein GlnD, at 2,553,847 to 2,556,519 glnD JDDGAC_13835: dapD - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,556,550 to 2,557,374 dapD Position (kb) 2553 2554 2555 2556 2557Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2552.868 kb on + strandat 2552.869 kb on - strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.951 kb on + strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2552.952 kb on - strandat 2553.821 kb on + strandat 2553.832 kb on + strandat 2556.526 kb on + strandat 2556.526 kb on + strandat 2556.532 kb on + strandat 2556.533 kb on - strandat 2557.362 kb on + strandat 2557.379 kb on - strandat 2557.426 kb on + strandat 2557.426 kb on + strandat 2557.437 kb on - strandat 2557.462 kb on - strandat 2557.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,552,868 + -0.4
2,552,869 - +0.1
2,552,951 + -0.2
2,552,951 + +0.6
2,552,951 + +0.6
2,552,951 + +1.1
2,552,951 + +0.0
2,552,951 + +0.9
2,552,951 + +0.3
2,552,951 + +0.1
2,552,952 - +0.3
2,552,952 - -0.7
2,552,952 - +0.1
2,552,952 - -1.1
2,552,952 - +0.2
2,552,952 - +1.9
2,552,952 - +0.9
2,552,952 - -0.1
2,552,952 - +0.5
2,552,952 - -0.7
2,553,821 + +1.6
2,553,832 + -1.4
2,556,526 + +0.2
2,556,526 + +0.0
2,556,532 + +0.3
2,556,533 - -2.7
2,557,362 + -0.0
2,557,379 - -0.3
2,557,426 + -0.9
2,557,426 + -1.5
2,557,437 - -2.2
2,557,462 - -3.2
2,557,495 + +1.9

Or see this region's nucleotide sequence