Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11965

Experiment: Control_ECRC98_WM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Control_ECRC98_WM
2,194,140	-	fadM	JDDGAC_11955	0.17	-2.8
2,194,148	+	fadM	JDDGAC_11955	0.19	+1.0
2,194,149	-	fadM	JDDGAC_11955	0.19	-0.3
2,194,160	+	fadM	JDDGAC_11955	0.22	-2.6
2,194,163	+	fadM	JDDGAC_11955	0.22	+1.3
2,194,163	+	fadM	JDDGAC_11955	0.22	+0.6
2,194,203	-	fadM	JDDGAC_11955	0.32	+0.3
2,194,216	-	fadM	JDDGAC_11955	0.36	-1.1
2,194,236	+	fadM	JDDGAC_11955	0.41	-0.3
2,194,256	+	fadM	JDDGAC_11955	0.46	+0.2
2,194,298	+	fadM	JDDGAC_11955	0.56	+0.8
2,194,299	-	fadM	JDDGAC_11955	0.56	+1.3
2,194,299	-	fadM	JDDGAC_11955	0.56	+0.2
2,194,299	-	fadM	JDDGAC_11955	0.56	+0.8
2,194,299	-	fadM	JDDGAC_11955	0.56	+0.8
2,194,299	-	fadM	JDDGAC_11955	0.56	+0.3
2,194,301	+	fadM	JDDGAC_11955	0.57	-1.5
2,194,307	+	fadM	JDDGAC_11955	0.58	-0.0
2,194,307	+	fadM	JDDGAC_11955	0.58	+0.8
2,194,331	+	fadM	JDDGAC_11955	0.64	+0.5
2,194,361	+	fadM	JDDGAC_11955	0.72	-0.3
2,194,405	+	fadM	JDDGAC_11955	0.83	+0.5
2,194,419	+	fadM	JDDGAC_11955	0.86	+1.3
2,194,487	-				+0.7
2,194,487	-				+0.1
2,194,487	-				-0.9
2,194,509	+				+0.5
2,194,509	+				-1.7
2,194,512	-				-0.6
2,194,512	-				+0.7
2,194,512	-				+2.1
2,194,515	+				+0.8
2,194,515	+				-2.3
2,194,567	-				-0.4
2,194,567	-				+1.0
2,194,580	-				-2.0
2,194,580	-				-1.5
2,194,588	-				-0.2
2,194,601	+				-0.2
2,194,641	+	ybaV	JDDGAC_11960	0.17	+0.2
2,194,641	+	ybaV	JDDGAC_11960	0.17	+0.1
2,194,642	-	ybaV	JDDGAC_11960	0.17	+0.8
2,194,642	-	ybaV	JDDGAC_11960	0.17	+1.1
2,194,669	+	ybaV	JDDGAC_11960	0.24	+0.4
2,194,669	+	ybaV	JDDGAC_11960	0.24	-0.0
2,194,801	-	ybaV	JDDGAC_11960	0.60	-0.1
2,194,811	+	ybaV	JDDGAC_11960	0.63	+1.0
2,194,812	-	ybaV	JDDGAC_11960	0.63	+0.2
2,195,061	+				-3.0
2,195,062	-				+1.5
2,195,102	-				+0.0
2,195,303	-	ppiD	JDDGAC_11965	0.11	-0.3
2,195,418	-	ppiD	JDDGAC_11965	0.17	+0.2
2,195,514	-	ppiD	JDDGAC_11965	0.22	-0.0
2,195,514	-	ppiD	JDDGAC_11965	0.22	+0.7
2,195,739	-	ppiD	JDDGAC_11965	0.34	+0.4
2,195,872	-	ppiD	JDDGAC_11965	0.41	+0.9
2,195,872	-	ppiD	JDDGAC_11965	0.41	+1.1
2,196,018	+	ppiD	JDDGAC_11965	0.49	+1.0
2,196,019	-	ppiD	JDDGAC_11965	0.49	+0.6
2,196,054	-	ppiD	JDDGAC_11965	0.51	-0.2
2,196,054	-	ppiD	JDDGAC_11965	0.51	+1.3
2,196,205	+	ppiD	JDDGAC_11965	0.59	+0.9
2,196,209	-	ppiD	JDDGAC_11965	0.59	+0.8
2,196,269	-	ppiD	JDDGAC_11965	0.62	+0.2
2,196,269	-	ppiD	JDDGAC_11965	0.62	+0.1
2,196,320	-	ppiD	JDDGAC_11965	0.65	+0.7
2,196,752	-	ppiD	JDDGAC_11965	0.88	-1.3
2,196,851	-				-0.1
2,196,895	-				+0.2
2,196,977	-				+0.6
2,197,101	+				+0.0
2,197,118	+				+0.0
2,197,118	+				-0.6
2,197,119	-				-0.4
2,197,164	+				+0.6
2,197,165	-				-3.2
2,197,189	+				-0.0
2,197,310	+	hupB	JDDGAC_11970	0.54	-1.8
2,197,310	+	hupB	JDDGAC_11970	0.54	-1.2
2,197,310	+	hupB	JDDGAC_11970	0.54	-0.2
2,197,310	+	hupB	JDDGAC_11970	0.54	-0.1
2,197,311	-	hupB	JDDGAC_11970	0.54	-1.6
2,197,311	-	hupB	JDDGAC_11970	0.54	-0.3
2,197,351	+	hupB	JDDGAC_11970	0.69	+0.2
2,197,352	-	hupB	JDDGAC_11970	0.69	-0.3
2,197,354	+	hupB	JDDGAC_11970	0.70	+0.0
2,197,354	+	hupB	JDDGAC_11970	0.70	-2.7
2,197,452	-				+0.7
2,197,452	-				-0.2
2,197,453	+				+0.1
2,197,454	-				-0.4
2,197,458	+				+0.5
2,197,459	-				-0.0
2,197,461	-				-2.8
2,197,500	+				+0.7
2,197,501	-				+0.0
2,197,501	-				-0.0
2,197,502	+				-0.2
2,197,502	+				-1.3
2,197,502	+				-0.4
2,197,502	+				-1.6
2,197,502	+				-0.3
2,197,523	-				+0.2
2,197,534	+				+0.6
2,197,537	+				-2.3
2,197,561	+				+0.2
2,197,562	-				+0.2
2,197,562	-				+0.6
2,197,562	-				+0.6
2,197,562	-				-0.9
2,197,562	-				-0.4
2,197,567	-				-1.0
2,197,599	+				-1.9
2,197,600	-				-0.5
2,197,623	-				-1.0
2,197,747	-				-0.9
2,197,747	-				-1.2
2,197,747	-				-2.5