Strain Fitness in Escherichia coli ECRC98 around JDDGAC_11810

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nthtpG and recR are separated by 109 nucleotidesrecR and ybaB overlap by 1 nucleotidesybaB and dnaX are separated by 52 nucleotides JDDGAC_11800: htpG - molecular chaperone HtpG, at 2,162,048 to 2,163,922 htpG JDDGAC_11805: recR - recombination mediator RecR, at 2,164,032 to 2,164,637 recR JDDGAC_11810: ybaB - YbaB/EbfC family nucleoid-associated protein, at 2,164,637 to 2,164,966 ybaB JDDGAC_11815: dnaX - DNA polymerase III subunit gamma/tau, at 2,165,019 to 2,166,950 dnaX Position (kb) 2164 2165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2163.849 kb on - strandat 2163.850 kb on - strandat 2163.924 kb on + strandat 2163.924 kb on + strandat 2163.924 kb on + strandat 2163.925 kb on - strandat 2163.925 kb on - strandat 2163.925 kb on - strandat 2163.938 kb on + strandat 2163.939 kb on - strandat 2163.939 kb on - strandat 2163.949 kb on + strandat 2164.046 kb on + strandat 2164.171 kb on + strand, within recRat 2164.171 kb on + strand, within recRat 2164.361 kb on - strand, within recRat 2164.431 kb on - strand, within recRat 2164.526 kb on + strand, within recRat 2164.607 kb on + strandat 2164.967 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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2,163,849 - +0.3
2,163,850 - +0.7
2,163,924 + +0.4
2,163,924 + +0.6
2,163,924 + +0.0
2,163,925 - +0.3
2,163,925 - -0.2
2,163,925 - +0.7
2,163,938 + +0.0
2,163,939 - +0.1
2,163,939 - +2.4
2,163,949 + +0.3
2,164,046 + -1.9
2,164,171 + recR JDDGAC_11805 0.23 -1.8
2,164,171 + recR JDDGAC_11805 0.23 +1.0
2,164,361 - recR JDDGAC_11805 0.54 +0.9
2,164,431 - recR JDDGAC_11805 0.66 -0.7
2,164,526 + recR JDDGAC_11805 0.82 -3.1
2,164,607 + +0.1
2,164,967 - -1.9

Or see this region's nucleotide sequence