Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_05485 and rusA are separated by 8 nucleotides rusA and JDDGAC_05495 are separated by 12 nucleotides JDDGAC_05495 and JDDGAC_05500 are separated by 328 nucleotides JDDGAC_05500 and JDDGAC_05505 are separated by 417 nucleotides
JDDGAC_05485: JDDGAC_05485 - DUF1133 domain-containing protein, at 965,886 to 966,416
_05485
JDDGAC_05490: rusA - Endodeoxyribonuclease RusA, at 966,425 to 966,784
rusA
JDDGAC_05495: JDDGAC_05495 - Zn-dependent oxidoreductase, at 966,797 to 966,958
_05495
JDDGAC_05500: JDDGAC_05500 - hypothetical protein, at 967,287 to 967,871
_05500
JDDGAC_05505: JDDGAC_05505 - transposase, at 968,289 to 970,379
_05505
Position (kb) 967
968 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 966.311 kb on - strand, within JDDGAC_05485 at 966.398 kb on + strand at 966.412 kb on - strand at 966.417 kb on - strand at 966.417 kb on - strand at 966.417 kb on - strand at 966.474 kb on - strand, within rusA at 966.474 kb on - strand, within rusA at 966.524 kb on + strand, within rusA at 966.524 kb on + strand, within rusA at 967.126 kb on - strand at 967.360 kb on - strand, within JDDGAC_05500 at 967.396 kb on - strand, within JDDGAC_05500 at 967.461 kb on + strand, within JDDGAC_05500 at 967.733 kb on - strand, within JDDGAC_05500 at 968.113 kb on - strand at 968.133 kb on + strand at 968.172 kb on + strand at 968.176 kb on + strand at 968.267 kb on + strand at 968.267 kb on + strand at 968.268 kb on - strand at 968.268 kb on - strand at 968.269 kb on + strand at 968.288 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.292 kb on + strand at 968.293 kb on - strand at 968.293 kb on - strand at 968.370 kb on + strand at 968.374 kb on + strand at 968.468 kb on - strand at 968.612 kb on + strand, within JDDGAC_05505 at 968.855 kb on + strand, within JDDGAC_05505
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 966,311 - JDDGAC_05485 0.80 -0.2 966,398 + +2.8 966,412 - -0.1 966,417 - -1.9 966,417 - +2.4 966,417 - -1.1 966,474 - rusA JDDGAC_05490 0.14 +0.2 966,474 - rusA JDDGAC_05490 0.14 -0.3 966,524 + rusA JDDGAC_05490 0.28 -0.2 966,524 + rusA JDDGAC_05490 0.28 +0.1 967,126 - +0.2 967,360 - JDDGAC_05500 0.12 +3.5 967,396 - JDDGAC_05500 0.19 -0.1 967,461 + JDDGAC_05500 0.30 +3.1 967,733 - JDDGAC_05500 0.76 -0.2 968,113 - -2.0 968,133 + +0.3 968,172 + +0.6 968,176 + -0.9 968,267 + -0.3 968,267 + -0.3 968,268 - -2.6 968,268 - -1.6 968,269 + -1.6 968,288 + -0.6 968,292 + -0.6 968,292 + +1.2 968,292 + -1.9 968,292 + -0.1 968,292 + +0.2 968,292 + -0.8 968,292 + +0.5 968,292 + +0.9 968,292 + -0.6 968,293 - +0.8 968,293 - -0.2 968,370 + +2.5 968,374 + +0.2 968,468 - +0.9 968,612 + JDDGAC_05505 0.15 +0.4 968,855 + JDDGAC_05505 0.27 -3.3
Or see this region's nucleotide sequence