Strain Fitness in Escherichia coli ECRC98 around JDDGAC_04480

Experiment: Control_ECRC98_WM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntJDDGAC_04465 and JDDGAC_04470 are separated by 1 nucleotidesJDDGAC_04470 and JDDGAC_04475 are separated by 220 nucleotidesJDDGAC_04475 and JDDGAC_04480 are separated by 50 nucleotidesJDDGAC_04480 and JDDGAC_04485 are separated by 4 nucleotidesJDDGAC_04485 and JDDGAC_04490 are separated by 447 nucleotides JDDGAC_04465: JDDGAC_04465 - lysis protein, at 792,943 to 793,410 _04465 JDDGAC_04470: JDDGAC_04470 - hypothetical protein, at 793,412 to 793,525 _04470 JDDGAC_04475: JDDGAC_04475 - SAR-endolysin, at 793,746 to 794,279 _04475 JDDGAC_04480: JDDGAC_04480 - DUF1327 domain-containing protein, at 794,330 to 794,674 _04480 JDDGAC_04485: JDDGAC_04485 - Holin, at 794,679 to 794,885 _04485 JDDGAC_04490: JDDGAC_04490 - DUF1737 domain-containing protein, at 795,333 to 797,183 _04490 Position (kb) 794 795Strain fitness (log2 ratio) -1 0 1at 794.726 kb on - strand, within JDDGAC_04485

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_ECRC98_WM
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794,726 - JDDGAC_04485 0.23 -0.3

Or see this region's nucleotide sequence