Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_02025 and MPMX26_02026 are separated by 99 nucleotides MPMX26_02026 and MPMX26_02027 are separated by 97 nucleotides MPMX26_02027 and MPMX26_02028 are separated by 2 nucleotides
MPMX26_02025: MPMX26_02025 - Anthranilate phosphoribosyltransferase, at 2,091,876 to 2,092,877
_02025
MPMX26_02026: MPMX26_02026 - hypothetical protein, at 2,092,977 to 2,093,318
_02026
MPMX26_02027: MPMX26_02027 - hypothetical protein, at 2,093,416 to 2,093,688
_02027
MPMX26_02028: MPMX26_02028 - NAD kinase, at 2,093,691 to 2,094,596
_02028
Position (kb)
2093
2094 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2092.422 kb on + strand, within MPMX26_02025 at 2092.422 kb on + strand, within MPMX26_02025 at 2092.428 kb on + strand, within MPMX26_02025 at 2092.484 kb on + strand, within MPMX26_02025 at 2092.545 kb on + strand, within MPMX26_02025 at 2092.554 kb on + strand, within MPMX26_02025 at 2092.559 kb on + strand, within MPMX26_02025 at 2092.569 kb on + strand, within MPMX26_02025 at 2092.569 kb on + strand, within MPMX26_02025 at 2092.569 kb on + strand, within MPMX26_02025 at 2092.569 kb on + strand, within MPMX26_02025 at 2092.608 kb on + strand, within MPMX26_02025 at 2092.622 kb on + strand, within MPMX26_02025 at 2092.622 kb on + strand, within MPMX26_02025 at 2092.664 kb on + strand, within MPMX26_02025 at 2092.749 kb on + strand, within MPMX26_02025 at 2092.801 kb on + strand at 2092.818 kb on + strand at 2093.019 kb on + strand, within MPMX26_02026 at 2093.404 kb on - strand at 2093.459 kb on - strand, within MPMX26_02027 at 2093.473 kb on - strand, within MPMX26_02027 at 2093.507 kb on - strand, within MPMX26_02027 at 2093.513 kb on + strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.541 kb on - strand, within MPMX26_02027 at 2093.577 kb on - strand, within MPMX26_02027 at 2093.684 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 2,092,422 + MPMX26_02025 0.54 -0.4 2,092,422 + MPMX26_02025 0.54 +0.5 2,092,428 + MPMX26_02025 0.55 +0.3 2,092,484 + MPMX26_02025 0.61 -1.9 2,092,545 + MPMX26_02025 0.67 -0.3 2,092,554 + MPMX26_02025 0.68 +2.9 2,092,559 + MPMX26_02025 0.68 -0.1 2,092,569 + MPMX26_02025 0.69 -0.1 2,092,569 + MPMX26_02025 0.69 +1.9 2,092,569 + MPMX26_02025 0.69 -0.1 2,092,569 + MPMX26_02025 0.69 -0.9 2,092,608 + MPMX26_02025 0.73 -0.1 2,092,622 + MPMX26_02025 0.74 +0.6 2,092,622 + MPMX26_02025 0.74 +0.9 2,092,664 + MPMX26_02025 0.79 +0.1 2,092,749 + MPMX26_02025 0.87 +1.3 2,092,801 + -0.8 2,092,818 + +0.1 2,093,019 + MPMX26_02026 0.12 +2.2 2,093,404 - +1.9 2,093,459 - MPMX26_02027 0.16 -1.4 2,093,473 - MPMX26_02027 0.21 -0.7 2,093,507 - MPMX26_02027 0.33 -0.5 2,093,513 + MPMX26_02027 0.36 +0.1 2,093,541 - MPMX26_02027 0.46 -1.3 2,093,541 - MPMX26_02027 0.46 +0.4 2,093,541 - MPMX26_02027 0.46 -1.1 2,093,541 - MPMX26_02027 0.46 -1.9 2,093,541 - MPMX26_02027 0.46 +0.3 2,093,541 - MPMX26_02027 0.46 +0.1 2,093,577 - MPMX26_02027 0.59 +0.9 2,093,684 - +0.1
Or see this region's nucleotide sequence