Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00987

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00986 and MPMX26_00987 overlap by 62 nucleotidesMPMX26_00987 and MPMX26_00988 overlap by 8 nucleotidesMPMX26_00988 and MPMX26_00989 are separated by 17 nucleotides MPMX26_00986: MPMX26_00986 - 3-hydroxylaminophenol mutase, at 1,039,409 to 1,040,818 _00986 MPMX26_00987: MPMX26_00987 - hypothetical protein, at 1,040,757 to 1,041,179 _00987 MPMX26_00988: MPMX26_00988 - Chorismate pyruvate-lyase, at 1,041,172 to 1,041,684 _00988 MPMX26_00989: MPMX26_00989 - 4-hydroxybenzoate octaprenyltransferase, at 1,041,702 to 1,042,583 _00989 Position (kb) 1040 1041 1042Strain fitness (log2 ratio) -2 -1 0 1 2at 1041.018 kb on + strand, within MPMX26_00987at 1041.114 kb on + strand, within MPMX26_00987at 1041.312 kb on + strand, within MPMX26_00988at 1041.438 kb on + strand, within MPMX26_00988at 1041.589 kb on + strand, within MPMX26_00988at 1041.606 kb on + strand, within MPMX26_00988at 1041.606 kb on + strand, within MPMX26_00988at 1041.606 kb on + strand, within MPMX26_00988at 1041.642 kb on + strandat 1041.645 kb on - strandat 1041.669 kb on - strandat 1041.699 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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1,041,018 + MPMX26_00987 0.62 +1.2
1,041,114 + MPMX26_00987 0.84 -0.0
1,041,312 + MPMX26_00988 0.27 +0.4
1,041,438 + MPMX26_00988 0.52 +0.6
1,041,589 + MPMX26_00988 0.81 +2.0
1,041,606 + MPMX26_00988 0.85 -1.9
1,041,606 + MPMX26_00988 0.85 +0.8
1,041,606 + MPMX26_00988 0.85 -1.7
1,041,642 + -0.3
1,041,645 - +0.5
1,041,669 - -0.3
1,041,699 + +0.4

Or see this region's nucleotide sequence