Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00810

Experiment: TSB with Dermcidin 2 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_00809 and MPMX26_00810 are separated by 496 nucleotidesMPMX26_00810 and MPMX26_00811 are separated by 204 nucleotidesMPMX26_00811 and MPMX26_00812 are separated by 102 nucleotides MPMX26_00809: MPMX26_00809 - Membrane-bound lytic murein transglycosylase F, at 856,773 to 857,624 _00809 MPMX26_00810: MPMX26_00810 - tRNA-cytidine(32) 2-sulfurtransferase, at 858,121 to 859,023 _00810 MPMX26_00811: MPMX26_00811 - hypothetical protein, at 859,228 to 859,614 _00811 MPMX26_00812: MPMX26_00812 - Membrane-bound lytic murein transglycosylase F, at 859,717 to 860,826 _00812 Position (kb) 858 859 860Strain fitness (log2 ratio) -2 -1 0 1 2 3at 857.229 kb on - strand, within MPMX26_00809at 857.246 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.255 kb on - strand, within MPMX26_00809at 857.285 kb on - strand, within MPMX26_00809at 857.285 kb on - strand, within MPMX26_00809at 857.295 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.297 kb on - strand, within MPMX26_00809at 857.307 kb on - strand, within MPMX26_00809at 857.307 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.312 kb on - strand, within MPMX26_00809at 857.333 kb on - strand, within MPMX26_00809at 857.423 kb on - strand, within MPMX26_00809at 857.425 kb on - strand, within MPMX26_00809at 857.439 kb on - strand, within MPMX26_00809at 857.504 kb on - strand, within MPMX26_00809at 857.504 kb on - strand, within MPMX26_00809at 857.505 kb on - strand, within MPMX26_00809at 857.506 kb on - strand, within MPMX26_00809at 857.506 kb on - strand, within MPMX26_00809at 857.543 kb on - strandat 857.543 kb on - strandat 857.556 kb on - strandat 857.558 kb on - strandat 857.565 kb on - strandat 857.573 kb on - strandat 857.579 kb on - strandat 857.589 kb on - strandat 858.111 kb on + strandat 858.161 kb on + strandat 858.179 kb on + strandat 858.179 kb on + strandat 858.188 kb on + strandat 858.188 kb on + strandat 858.232 kb on + strand, within MPMX26_00810at 858.256 kb on + strand, within MPMX26_00810at 858.259 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.266 kb on + strand, within MPMX26_00810at 858.267 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.268 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.289 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.297 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.299 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.327 kb on + strand, within MPMX26_00810at 858.371 kb on + strand, within MPMX26_00810at 858.371 kb on + strand, within MPMX26_00810at 858.406 kb on + strand, within MPMX26_00810at 858.419 kb on + strand, within MPMX26_00810at 858.441 kb on + strand, within MPMX26_00810at 858.462 kb on + strand, within MPMX26_00810at 858.462 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.464 kb on + strand, within MPMX26_00810at 858.482 kb on + strand, within MPMX26_00810at 858.509 kb on + strand, within MPMX26_00810at 858.516 kb on + strand, within MPMX26_00810at 858.523 kb on + strand, within MPMX26_00810at 858.523 kb on + strand, within MPMX26_00810at 858.533 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.548 kb on + strand, within MPMX26_00810at 858.603 kb on + strand, within MPMX26_00810at 858.620 kb on + strand, within MPMX26_00810at 858.630 kb on + strand, within MPMX26_00810at 858.630 kb on + strand, within MPMX26_00810at 858.644 kb on + strand, within MPMX26_00810at 858.644 kb on + strand, within MPMX26_00810at 858.770 kb on + strand, within MPMX26_00810at 858.780 kb on + strand, within MPMX26_00810at 858.837 kb on + strand, within MPMX26_00810at 858.837 kb on + strand, within MPMX26_00810at 858.837 kb on + strand, within MPMX26_00810at 858.837 kb on + strand, within MPMX26_00810at 858.838 kb on + strand, within MPMX26_00810at 858.856 kb on + strand, within MPMX26_00810at 858.856 kb on + strand, within MPMX26_00810at 858.856 kb on + strand, within MPMX26_00810at 858.887 kb on + strand, within MPMX26_00810at 858.911 kb on + strand, within MPMX26_00810at 858.911 kb on + strand, within MPMX26_00810at 858.952 kb on + strandat 858.952 kb on + strandat 858.953 kb on + strandat 859.049 kb on + strandat 859.179 kb on + strandat 859.187 kb on + strandat 859.246 kb on + strandat 859.291 kb on + strand, within MPMX26_00811at 859.291 kb on + strand, within MPMX26_00811at 859.309 kb on + strand, within MPMX26_00811at 859.309 kb on + strand, within MPMX26_00811at 859.309 kb on + strand, within MPMX26_00811at 859.309 kb on + strand, within MPMX26_00811at 859.353 kb on + strand, within MPMX26_00811at 859.353 kb on + strand, within MPMX26_00811at 859.353 kb on + strand, within MPMX26_00811at 859.413 kb on + strand, within MPMX26_00811at 859.428 kb on + strand, within MPMX26_00811at 859.438 kb on + strand, within MPMX26_00811at 859.439 kb on + strand, within MPMX26_00811at 859.439 kb on + strand, within MPMX26_00811at 859.439 kb on + strand, within MPMX26_00811at 859.449 kb on + strand, within MPMX26_00811at 859.510 kb on + strand, within MPMX26_00811at 859.543 kb on + strand, within MPMX26_00811at 859.543 kb on + strand, within MPMX26_00811at 859.543 kb on + strand, within MPMX26_00811at 859.543 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.553 kb on + strand, within MPMX26_00811at 859.565 kb on + strand, within MPMX26_00811

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Per-strain Table

Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL
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857,229 - MPMX26_00809 0.54 -0.4
857,246 - MPMX26_00809 0.56 +0.1
857,255 - MPMX26_00809 0.57 -0.5
857,255 - MPMX26_00809 0.57 +0.3
857,255 - MPMX26_00809 0.57 -0.4
857,285 - MPMX26_00809 0.60 -0.1
857,285 - MPMX26_00809 0.60 +1.0
857,295 - MPMX26_00809 0.61 +1.0
857,297 - MPMX26_00809 0.62 -0.9
857,297 - MPMX26_00809 0.62 +1.2
857,297 - MPMX26_00809 0.62 +0.0
857,297 - MPMX26_00809 0.62 +0.9
857,297 - MPMX26_00809 0.62 +2.9
857,297 - MPMX26_00809 0.62 +0.9
857,307 - MPMX26_00809 0.63 -0.3
857,307 - MPMX26_00809 0.63 -1.1
857,312 - MPMX26_00809 0.63 -0.2
857,312 - MPMX26_00809 0.63 -0.3
857,312 - MPMX26_00809 0.63 +0.1
857,333 - MPMX26_00809 0.66 +0.2
857,423 - MPMX26_00809 0.76 +0.2
857,425 - MPMX26_00809 0.77 -0.8
857,439 - MPMX26_00809 0.78 -1.1
857,504 - MPMX26_00809 0.86 -0.9
857,504 - MPMX26_00809 0.86 -0.4
857,505 - MPMX26_00809 0.86 +0.3
857,506 - MPMX26_00809 0.86 +1.4
857,506 - MPMX26_00809 0.86 +2.4
857,543 - +0.2
857,543 - -0.0
857,556 - +1.1
857,558 - +0.7
857,565 - +0.1
857,573 - -0.1
857,579 - -0.6
857,589 - +2.5
858,111 + +0.6
858,161 + +0.4
858,179 + +0.9
858,179 + +0.0
858,188 + +0.1
858,188 + -1.1
858,232 + MPMX26_00810 0.12 -0.6
858,256 + MPMX26_00810 0.15 +0.6
858,259 + MPMX26_00810 0.15 +0.1
858,266 + MPMX26_00810 0.16 +0.9
858,266 + MPMX26_00810 0.16 +0.3
858,266 + MPMX26_00810 0.16 +0.0
858,266 + MPMX26_00810 0.16 -0.3
858,266 + MPMX26_00810 0.16 +0.7
858,266 + MPMX26_00810 0.16 -0.1
858,266 + MPMX26_00810 0.16 -0.2
858,266 + MPMX26_00810 0.16 -1.0
858,266 + MPMX26_00810 0.16 +1.2
858,266 + MPMX26_00810 0.16 -1.0
858,266 + MPMX26_00810 0.16 -0.7
858,266 + MPMX26_00810 0.16 -0.9
858,267 + MPMX26_00810 0.16 -0.6
858,268 + MPMX26_00810 0.16 -0.2
858,268 + MPMX26_00810 0.16 -0.3
858,268 + MPMX26_00810 0.16 -0.8
858,289 + MPMX26_00810 0.19 -1.1
858,289 + MPMX26_00810 0.19 +0.4
858,289 + MPMX26_00810 0.19 -0.1
858,297 + MPMX26_00810 0.19 -1.2
858,297 + MPMX26_00810 0.19 +0.0
858,297 + MPMX26_00810 0.19 -0.8
858,297 + MPMX26_00810 0.19 -1.1
858,297 + MPMX26_00810 0.19 +0.4
858,297 + MPMX26_00810 0.19 -0.8
858,299 + MPMX26_00810 0.20 -0.2
858,299 + MPMX26_00810 0.20 -1.3
858,299 + MPMX26_00810 0.20 -1.0
858,327 + MPMX26_00810 0.23 +0.7
858,327 + MPMX26_00810 0.23 +0.3
858,327 + MPMX26_00810 0.23 +1.2
858,371 + MPMX26_00810 0.28 +0.1
858,371 + MPMX26_00810 0.28 -0.6
858,406 + MPMX26_00810 0.32 -0.8
858,419 + MPMX26_00810 0.33 -0.6
858,441 + MPMX26_00810 0.35 -0.3
858,462 + MPMX26_00810 0.38 +1.0
858,462 + MPMX26_00810 0.38 +0.2
858,464 + MPMX26_00810 0.38 +0.3
858,464 + MPMX26_00810 0.38 +0.8
858,464 + MPMX26_00810 0.38 +0.4
858,464 + MPMX26_00810 0.38 +0.3
858,482 + MPMX26_00810 0.40 -0.6
858,509 + MPMX26_00810 0.43 -0.2
858,516 + MPMX26_00810 0.44 +0.3
858,523 + MPMX26_00810 0.45 -1.1
858,523 + MPMX26_00810 0.45 -0.3
858,533 + MPMX26_00810 0.46 -0.6
858,548 + MPMX26_00810 0.47 -0.7
858,548 + MPMX26_00810 0.47 -0.3
858,548 + MPMX26_00810 0.47 -0.8
858,603 + MPMX26_00810 0.53 +0.9
858,620 + MPMX26_00810 0.55 +0.4
858,630 + MPMX26_00810 0.56 -0.4
858,630 + MPMX26_00810 0.56 -0.8
858,644 + MPMX26_00810 0.58 -0.1
858,644 + MPMX26_00810 0.58 -0.6
858,770 + MPMX26_00810 0.72 -0.3
858,780 + MPMX26_00810 0.73 +0.3
858,837 + MPMX26_00810 0.79 -0.4
858,837 + MPMX26_00810 0.79 -0.2
858,837 + MPMX26_00810 0.79 +1.6
858,837 + MPMX26_00810 0.79 +1.0
858,838 + MPMX26_00810 0.79 -0.9
858,856 + MPMX26_00810 0.81 -0.2
858,856 + MPMX26_00810 0.81 -1.8
858,856 + MPMX26_00810 0.81 +0.1
858,887 + MPMX26_00810 0.85 -0.4
858,911 + MPMX26_00810 0.87 -0.9
858,911 + MPMX26_00810 0.87 -1.1
858,952 + -0.7
858,952 + -0.7
858,953 + -0.4
859,049 + +1.9
859,179 + -0.2
859,187 + +1.4
859,246 + -2.4
859,291 + MPMX26_00811 0.16 -2.2
859,291 + MPMX26_00811 0.16 -1.8
859,309 + MPMX26_00811 0.21 -2.1
859,309 + MPMX26_00811 0.21 -0.4
859,309 + MPMX26_00811 0.21 -0.6
859,309 + MPMX26_00811 0.21 -1.5
859,353 + MPMX26_00811 0.32 -0.8
859,353 + MPMX26_00811 0.32 -1.0
859,353 + MPMX26_00811 0.32 -1.0
859,413 + MPMX26_00811 0.48 -0.7
859,428 + MPMX26_00811 0.52 -1.0
859,438 + MPMX26_00811 0.54 +0.5
859,439 + MPMX26_00811 0.55 -0.6
859,439 + MPMX26_00811 0.55 -0.3
859,439 + MPMX26_00811 0.55 -0.5
859,449 + MPMX26_00811 0.57 -0.5
859,510 + MPMX26_00811 0.73 +0.1
859,543 + MPMX26_00811 0.81 -0.1
859,543 + MPMX26_00811 0.81 -2.0
859,543 + MPMX26_00811 0.81 +0.4
859,543 + MPMX26_00811 0.81 -2.0
859,553 + MPMX26_00811 0.84 -0.3
859,553 + MPMX26_00811 0.84 -2.4
859,553 + MPMX26_00811 0.84 +0.1
859,553 + MPMX26_00811 0.84 -1.3
859,553 + MPMX26_00811 0.84 -0.5
859,553 + MPMX26_00811 0.84 -0.8
859,553 + MPMX26_00811 0.84 -0.9
859,553 + MPMX26_00811 0.84 -1.4
859,553 + MPMX26_00811 0.84 -1.0
859,553 + MPMX26_00811 0.84 +1.6
859,565 + MPMX26_00811 0.87 -1.0

Or see this region's nucleotide sequence