Experiment: TSB with Dermcidin 2 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX26_00738 and MPMX26_00739 are separated by 1 nucleotides MPMX26_00739 and MPMX26_00740 are separated by 445 nucleotides MPMX26_00740 and MPMX26_00741 are separated by 80 nucleotides MPMX26_00741 and MPMX26_00742 are separated by 159 nucleotides MPMX26_00742 and MPMX26_00743 are separated by 112 nucleotides
MPMX26_00738: MPMX26_00738 - Phosphopantetheine adenylyltransferase, at 776,865 to 777,356
_00738
MPMX26_00739: MPMX26_00739 - Ferredoxin, at 777,358 to 777,621
_00739
MPMX26_00740: MPMX26_00740 - tRNA-Met, at 778,067 to 778,143
_00740
MPMX26_00741: MPMX26_00741 - hypothetical protein, at 778,224 to 778,628
_00741
MPMX26_00742: MPMX26_00742 - tRNA-Met, at 778,788 to 778,864
_00742
MPMX26_00743: MPMX26_00743 - hypothetical protein, at 778,977 to 780,014
_00743
Position (kb) 778
779 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 777.348 kb on + strand at 777.348 kb on + strand at 777.527 kb on + strand, within MPMX26_00739 at 777.541 kb on + strand, within MPMX26_00739 at 777.541 kb on + strand, within MPMX26_00739 at 777.541 kb on + strand, within MPMX26_00739 at 777.541 kb on + strand, within MPMX26_00739 at 777.541 kb on + strand, within MPMX26_00739 at 777.598 kb on + strand at 778.015 kb on + strand at 778.020 kb on + strand at 778.044 kb on + strand at 778.061 kb on + strand at 778.061 kb on + strand at 778.061 kb on + strand at 778.061 kb on + strand at 778.061 kb on + strand at 778.061 kb on + strand at 778.071 kb on + strand at 778.071 kb on + strand at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.084 kb on + strand, within MPMX26_00740 at 778.091 kb on + strand, within MPMX26_00740 at 778.091 kb on + strand, within MPMX26_00740 at 778.099 kb on + strand, within MPMX26_00740 at 778.119 kb on + strand, within MPMX26_00740 at 778.742 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.782 kb on + strand at 778.792 kb on + strand at 778.792 kb on + strand at 778.805 kb on + strand, within MPMX26_00742 at 778.805 kb on + strand, within MPMX26_00742 at 778.805 kb on + strand, within MPMX26_00742 at 778.805 kb on + strand, within MPMX26_00742 at 778.805 kb on + strand, within MPMX26_00742 at 778.805 kb on + strand, within MPMX26_00742 at 778.810 kb on + strand, within MPMX26_00742 at 778.812 kb on + strand, within MPMX26_00742 at 778.812 kb on + strand, within MPMX26_00742 at 778.840 kb on + strand, within MPMX26_00742 at 778.850 kb on + strand, within MPMX26_00742 at 778.880 kb on + strand at 778.995 kb on - strand at 779.006 kb on + strand at 779.022 kb on - strand at 779.024 kb on - strand at 779.024 kb on - strand at 779.029 kb on - strand at 779.043 kb on - strand at 779.051 kb on - strand at 779.091 kb on - strand, within MPMX26_00743 at 779.105 kb on - strand, within MPMX26_00743 at 779.147 kb on - strand, within MPMX26_00743 at 779.220 kb on - strand, within MPMX26_00743 at 779.322 kb on - strand, within MPMX26_00743 at 779.327 kb on - strand, within MPMX26_00743 at 779.329 kb on - strand, within MPMX26_00743 at 779.363 kb on - strand, within MPMX26_00743 at 779.409 kb on - strand, within MPMX26_00743 at 779.456 kb on - strand, within MPMX26_00743 at 779.594 kb on - strand, within MPMX26_00743 at 779.594 kb on - strand, within MPMX26_00743 at 779.594 kb on - strand, within MPMX26_00743 at 779.598 kb on - strand, within MPMX26_00743
Per-strain Table
Position Strand Gene LocusTag Fraction TSB with Dermcidin 2 ug/mL remove 777,348 + -0.8 777,348 + +0.1 777,527 + MPMX26_00739 0.64 -1.5 777,541 + MPMX26_00739 0.69 -0.8 777,541 + MPMX26_00739 0.69 -1.2 777,541 + MPMX26_00739 0.69 -0.9 777,541 + MPMX26_00739 0.69 +0.9 777,541 + MPMX26_00739 0.69 -1.1 777,598 + -0.4 778,015 + -0.0 778,020 + -0.5 778,044 + +0.2 778,061 + -0.8 778,061 + -0.9 778,061 + +3.4 778,061 + -0.1 778,061 + +0.8 778,061 + -0.3 778,071 + -0.3 778,071 + +0.2 778,084 + MPMX26_00740 0.22 +0.0 778,084 + MPMX26_00740 0.22 -0.0 778,084 + MPMX26_00740 0.22 +0.2 778,084 + MPMX26_00740 0.22 -0.0 778,084 + MPMX26_00740 0.22 -0.5 778,084 + MPMX26_00740 0.22 -0.9 778,084 + MPMX26_00740 0.22 +0.1 778,091 + MPMX26_00740 0.31 -0.1 778,091 + MPMX26_00740 0.31 -0.0 778,099 + MPMX26_00740 0.42 +0.2 778,119 + MPMX26_00740 0.68 -0.0 778,742 + +0.0 778,782 + -0.9 778,782 + -1.2 778,782 + -0.2 778,782 + -1.6 778,782 + -1.2 778,782 + +0.9 778,782 + -1.9 778,782 + +0.1 778,782 + -2.2 778,782 + -1.3 778,792 + -1.9 778,792 + +0.1 778,805 + MPMX26_00742 0.22 -2.0 778,805 + MPMX26_00742 0.22 -1.2 778,805 + MPMX26_00742 0.22 -1.1 778,805 + MPMX26_00742 0.22 -0.7 778,805 + MPMX26_00742 0.22 -1.0 778,805 + MPMX26_00742 0.22 -1.7 778,810 + MPMX26_00742 0.29 -0.2 778,812 + MPMX26_00742 0.31 -0.9 778,812 + MPMX26_00742 0.31 -2.7 778,840 + MPMX26_00742 0.68 -2.2 778,850 + MPMX26_00742 0.81 -0.6 778,880 + -0.6 778,995 - -1.5 779,006 + -0.7 779,022 - -0.2 779,024 - -2.3 779,024 - -0.6 779,029 - +0.3 779,043 - -1.0 779,051 - -0.2 779,091 - MPMX26_00743 0.11 +0.0 779,105 - MPMX26_00743 0.12 -0.4 779,147 - MPMX26_00743 0.16 -0.5 779,220 - MPMX26_00743 0.23 +1.9 779,322 - MPMX26_00743 0.33 -0.1 779,327 - MPMX26_00743 0.34 -0.8 779,329 - MPMX26_00743 0.34 +0.9 779,363 - MPMX26_00743 0.37 -1.1 779,409 - MPMX26_00743 0.42 -0.5 779,456 - MPMX26_00743 0.46 +2.2 779,594 - MPMX26_00743 0.59 +2.9 779,594 - MPMX26_00743 0.59 +0.7 779,594 - MPMX26_00743 0.59 -2.0 779,598 - MPMX26_00743 0.60 +0.8
Or see this region's nucleotide sequence