Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yncB and JDDGAC_30170 are separated by 45 nucleotides JDDGAC_30170 and JDDGAC_30175 are separated by 37 nucleotides JDDGAC_30175 and repA2 are separated by 239 nucleotides repA2 and tap are separated by 235 nucleotides tap and repA overlap by 8 nucleotides
JDDGAC_30165: yncB - Uncharacterized endonuclease, at 57,363 to 57,824
yncB
JDDGAC_30170: JDDGAC_30170 - transcriptional regulator, at 57,870 to 58,079
_30170
JDDGAC_30175: JDDGAC_30175 - W0003, at 58,117 to 58,455
_30175
JDDGAC_30180: repA2 - Replication regulatory protein repA2, at 58,695 to 58,949
repA2
JDDGAC_30190: tap - RepA leader peptide Tap, at 59,185 to 59,259
tap
JDDGAC_30195: repA - incFII family plasmid replication initiator RepA, at 59,252 to 60,109
repA
Position (kb) 58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 57.703 kb on - strand, within yncB at 57.711 kb on + strand, within yncB at 57.805 kb on + strand at 57.822 kb on + strand at 57.898 kb on - strand, within JDDGAC_30170 at 58.077 kb on + strand at 58.090 kb on + strand at 58.163 kb on + strand, within JDDGAC_30175 at 58.276 kb on + strand, within JDDGAC_30175 at 58.276 kb on + strand, within JDDGAC_30175 at 58.276 kb on + strand, within JDDGAC_30175 at 58.277 kb on - strand, within JDDGAC_30175 at 58.293 kb on - strand, within JDDGAC_30175 at 58.351 kb on - strand, within JDDGAC_30175 at 58.413 kb on + strand, within JDDGAC_30175 at 58.413 kb on + strand, within JDDGAC_30175 at 58.414 kb on - strand, within JDDGAC_30175 at 58.449 kb on + strand at 58.542 kb on + strand at 58.546 kb on - strand at 58.546 kb on - strand at 58.567 kb on + strand at 58.577 kb on + strand at 58.648 kb on + strand at 58.676 kb on + strand at 58.676 kb on + strand at 58.676 kb on + strand at 58.746 kb on + strand, within repA2 at 58.746 kb on + strand, within repA2 at 58.747 kb on - strand, within repA2 at 58.789 kb on + strand, within repA2 at 58.789 kb on + strand, within repA2 at 58.825 kb on + strand, within repA2 at 58.826 kb on - strand, within repA2 at 58.826 kb on - strand, within repA2 at 58.848 kb on + strand, within repA2 at 58.848 kb on + strand, within repA2 at 58.849 kb on - strand, within repA2 at 58.851 kb on - strand, within repA2 at 58.960 kb on - strand at 58.983 kb on + strand at 58.989 kb on + strand at 59.179 kb on - strand at 59.184 kb on + strand at 59.237 kb on + strand, within tap at 59.237 kb on + strand, within tap at 59.237 kb on + strand, within tap at 59.274 kb on - strand at 59.274 kb on - strand at 59.274 kb on - strand at 59.274 kb on - strand at 59.679 kb on - strand, within repA at 59.873 kb on + strand, within repA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 57,703 - yncB JDDGAC_30165 0.74 +0.1 57,711 + yncB JDDGAC_30165 0.75 +1.0 57,805 + +0.3 57,822 + +0.8 57,898 - JDDGAC_30170 0.13 +2.5 58,077 + -1.4 58,090 + -1.2 58,163 + JDDGAC_30175 0.14 -0.8 58,276 + JDDGAC_30175 0.47 +0.0 58,276 + JDDGAC_30175 0.47 +1.7 58,276 + JDDGAC_30175 0.47 -0.3 58,277 - JDDGAC_30175 0.47 -0.9 58,293 - JDDGAC_30175 0.52 +0.1 58,351 - JDDGAC_30175 0.69 -0.1 58,413 + JDDGAC_30175 0.87 +0.3 58,413 + JDDGAC_30175 0.87 -0.6 58,414 - JDDGAC_30175 0.88 -0.3 58,449 + -0.5 58,542 + +0.9 58,546 - -1.3 58,546 - -0.0 58,567 + +1.1 58,577 + +0.9 58,648 + -0.2 58,676 + -0.3 58,676 + -0.1 58,676 + +0.7 58,746 + repA2 JDDGAC_30180 0.20 -1.0 58,746 + repA2 JDDGAC_30180 0.20 -1.5 58,747 - repA2 JDDGAC_30180 0.20 -1.2 58,789 + repA2 JDDGAC_30180 0.37 -2.5 58,789 + repA2 JDDGAC_30180 0.37 -0.0 58,825 + repA2 JDDGAC_30180 0.51 -1.3 58,826 - repA2 JDDGAC_30180 0.51 -2.1 58,826 - repA2 JDDGAC_30180 0.51 -2.7 58,848 + repA2 JDDGAC_30180 0.60 -2.3 58,848 + repA2 JDDGAC_30180 0.60 -1.3 58,849 - repA2 JDDGAC_30180 0.60 -0.1 58,851 - repA2 JDDGAC_30180 0.61 -1.7 58,960 - -1.8 58,983 + -1.6 58,989 + +1.3 59,179 - +1.6 59,184 + -0.4 59,237 + tap JDDGAC_30190 0.69 -1.0 59,237 + tap JDDGAC_30190 0.69 +0.4 59,237 + tap JDDGAC_30190 0.69 +0.4 59,274 - -1.1 59,274 - +1.6 59,274 - -0.7 59,274 - +0.4 59,679 - repA JDDGAC_30195 0.50 -1.7 59,873 + repA JDDGAC_30195 0.72 +0.8
Or see this region's nucleotide sequence