Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisD and hisG are separated by 5 nucleotides hisG and hisL are separated by 145 nucleotides hisL and yeeZ are separated by 425 nucleotides
JDDGAC_28625: hisD - Histidinol dehydrogenase, at 5,494,770 to 5,496,074
hisD
JDDGAC_28630: hisG - ATP phosphoribosyltransferase, at 5,496,080 to 5,496,979
hisG
JDDGAC_28635: hisL - his operon leader peptide, at 5,497,125 to 5,497,175
hisL
JDDGAC_28640: yeeZ - Protein YeeZ, at 5,497,601 to 5,498,425
yeeZ
Position (kb) 5496
5497 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 5495.266 kb on - strand, within hisD at 5495.646 kb on + strand, within hisD at 5495.646 kb on + strand, within hisD at 5495.650 kb on - strand, within hisD at 5495.686 kb on + strand, within hisD at 5495.686 kb on + strand, within hisD at 5495.687 kb on - strand, within hisD at 5495.754 kb on + strand, within hisD at 5495.824 kb on - strand, within hisD at 5495.913 kb on - strand, within hisD at 5496.045 kb on - strand at 5496.298 kb on - strand, within hisG at 5496.393 kb on - strand, within hisG at 5496.415 kb on - strand, within hisG at 5496.415 kb on - strand, within hisG at 5496.418 kb on + strand, within hisG at 5496.418 kb on + strand, within hisG at 5496.418 kb on + strand, within hisG at 5496.568 kb on - strand, within hisG at 5496.702 kb on + strand, within hisG at 5496.703 kb on - strand, within hisG at 5496.733 kb on + strand, within hisG at 5496.779 kb on + strand, within hisG at 5496.833 kb on - strand, within hisG at 5496.950 kb on - strand at 5496.953 kb on + strand at 5496.986 kb on - strand at 5497.127 kb on - strand at 5497.176 kb on - strand at 5497.254 kb on - strand at 5497.257 kb on + strand at 5497.258 kb on - strand at 5497.258 kb on - strand at 5497.263 kb on - strand at 5497.308 kb on + strand at 5497.318 kb on + strand at 5497.343 kb on + strand at 5497.383 kb on - strand at 5497.423 kb on + strand at 5497.456 kb on + strand at 5497.475 kb on + strand at 5497.502 kb on + strand at 5497.503 kb on - strand at 5497.504 kb on + strand at 5497.504 kb on + strand at 5497.504 kb on + strand at 5497.532 kb on + strand at 5497.570 kb on + strand at 5497.572 kb on + strand at 5497.578 kb on + strand at 5497.626 kb on + strand at 5497.691 kb on - strand, within yeeZ at 5497.738 kb on + strand, within yeeZ at 5497.738 kb on + strand, within yeeZ at 5497.738 kb on + strand, within yeeZ at 5497.738 kb on + strand, within yeeZ at 5497.742 kb on + strand, within yeeZ at 5497.742 kb on + strand, within yeeZ at 5497.742 kb on + strand, within yeeZ at 5497.862 kb on + strand, within yeeZ at 5497.862 kb on + strand, within yeeZ at 5497.884 kb on + strand, within yeeZ
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,495,266 - hisD JDDGAC_28625 0.38 -1.1 5,495,646 + hisD JDDGAC_28625 0.67 +0.6 5,495,646 + hisD JDDGAC_28625 0.67 -2.7 5,495,650 - hisD JDDGAC_28625 0.67 -2.9 5,495,686 + hisD JDDGAC_28625 0.70 -2.9 5,495,686 + hisD JDDGAC_28625 0.70 -1.1 5,495,687 - hisD JDDGAC_28625 0.70 -3.3 5,495,754 + hisD JDDGAC_28625 0.75 -0.8 5,495,824 - hisD JDDGAC_28625 0.81 -2.3 5,495,913 - hisD JDDGAC_28625 0.88 -1.5 5,496,045 - -0.7 5,496,298 - hisG JDDGAC_28630 0.24 -1.1 5,496,393 - hisG JDDGAC_28630 0.35 -5.1 5,496,415 - hisG JDDGAC_28630 0.37 -2.0 5,496,415 - hisG JDDGAC_28630 0.37 -1.8 5,496,418 + hisG JDDGAC_28630 0.38 -1.3 5,496,418 + hisG JDDGAC_28630 0.38 -1.4 5,496,418 + hisG JDDGAC_28630 0.38 -2.1 5,496,568 - hisG JDDGAC_28630 0.54 -0.2 5,496,702 + hisG JDDGAC_28630 0.69 +0.1 5,496,703 - hisG JDDGAC_28630 0.69 -0.7 5,496,733 + hisG JDDGAC_28630 0.73 +0.0 5,496,779 + hisG JDDGAC_28630 0.78 -1.7 5,496,833 - hisG JDDGAC_28630 0.84 -1.7 5,496,950 - -3.8 5,496,953 + -1.2 5,496,986 - -0.9 5,497,127 - +0.2 5,497,176 - -1.2 5,497,254 - -1.4 5,497,257 + -0.5 5,497,258 - -0.2 5,497,258 - +0.3 5,497,263 - +0.0 5,497,308 + +0.1 5,497,318 + -0.2 5,497,343 + -2.5 5,497,383 - -0.2 5,497,423 + -0.1 5,497,456 + +0.1 5,497,475 + -0.9 5,497,502 + +0.4 5,497,503 - +1.2 5,497,504 + +0.1 5,497,504 + +0.6 5,497,504 + +1.3 5,497,532 + +0.5 5,497,570 + +1.0 5,497,572 + +1.1 5,497,578 + +0.4 5,497,626 + -0.0 5,497,691 - yeeZ JDDGAC_28640 0.11 -1.7 5,497,738 + yeeZ JDDGAC_28640 0.17 +0.0 5,497,738 + yeeZ JDDGAC_28640 0.17 -0.6 5,497,738 + yeeZ JDDGAC_28640 0.17 -0.5 5,497,738 + yeeZ JDDGAC_28640 0.17 +1.1 5,497,742 + yeeZ JDDGAC_28640 0.17 -0.1 5,497,742 + yeeZ JDDGAC_28640 0.17 +0.1 5,497,742 + yeeZ JDDGAC_28640 0.17 -0.4 5,497,862 + yeeZ JDDGAC_28640 0.32 +0.2 5,497,862 + yeeZ JDDGAC_28640 0.32 +0.2 5,497,884 + yeeZ JDDGAC_28640 0.34 -0.6
Or see this region's nucleotide sequence