Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hisB and hisC overlap by 1 nucleotides hisC and hisD overlap by 4 nucleotides
JDDGAC_28615: hisB - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 5,492,636 to 5,493,703
hisB
JDDGAC_28620: hisC - histidinol-phosphate transaminase, at 5,493,703 to 5,494,773
hisC
JDDGAC_28625: hisD - Histidinol dehydrogenase, at 5,494,770 to 5,496,074
hisD
Position (kb) 5493
5494
5495 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5492.746 kb on + strand, within hisB at 5492.784 kb on + strand, within hisB at 5492.844 kb on + strand, within hisB at 5492.860 kb on + strand, within hisB at 5493.031 kb on - strand, within hisB at 5493.031 kb on - strand, within hisB at 5493.121 kb on + strand, within hisB at 5493.192 kb on - strand, within hisB at 5493.467 kb on + strand, within hisB at 5493.658 kb on + strand at 5493.691 kb on - strand at 5493.691 kb on - strand at 5493.691 kb on - strand at 5493.817 kb on - strand, within hisC at 5493.878 kb on + strand, within hisC at 5493.879 kb on - strand, within hisC at 5493.879 kb on - strand, within hisC at 5494.214 kb on + strand, within hisC at 5494.214 kb on + strand, within hisC at 5494.214 kb on + strand, within hisC at 5494.322 kb on + strand, within hisC at 5494.323 kb on - strand, within hisC at 5494.323 kb on - strand, within hisC at 5494.363 kb on + strand, within hisC at 5494.436 kb on + strand, within hisC at 5494.437 kb on - strand, within hisC at 5494.512 kb on + strand, within hisC at 5494.555 kb on + strand, within hisC at 5494.556 kb on - strand, within hisC at 5494.758 kb on + strand at 5494.785 kb on - strand at 5494.805 kb on + strand at 5494.881 kb on + strand at 5494.882 kb on - strand at 5494.954 kb on + strand, within hisD at 5494.954 kb on + strand, within hisD at 5494.955 kb on - strand, within hisD at 5494.993 kb on + strand, within hisD at 5495.266 kb on - strand, within hisD at 5495.646 kb on + strand, within hisD at 5495.646 kb on + strand, within hisD at 5495.650 kb on - strand, within hisD at 5495.686 kb on + strand, within hisD at 5495.686 kb on + strand, within hisD at 5495.687 kb on - strand, within hisD at 5495.754 kb on + strand, within hisD
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,492,746 + hisB JDDGAC_28615 0.10 -4.0 5,492,784 + hisB JDDGAC_28615 0.14 +0.2 5,492,844 + hisB JDDGAC_28615 0.19 -2.9 5,492,860 + hisB JDDGAC_28615 0.21 -3.0 5,493,031 - hisB JDDGAC_28615 0.37 -4.6 5,493,031 - hisB JDDGAC_28615 0.37 -1.7 5,493,121 + hisB JDDGAC_28615 0.45 -2.6 5,493,192 - hisB JDDGAC_28615 0.52 +1.1 5,493,467 + hisB JDDGAC_28615 0.78 -0.1 5,493,658 + -1.9 5,493,691 - -3.9 5,493,691 - -4.4 5,493,691 - -1.6 5,493,817 - hisC JDDGAC_28620 0.11 -0.4 5,493,878 + hisC JDDGAC_28620 0.16 -1.6 5,493,879 - hisC JDDGAC_28620 0.16 -0.9 5,493,879 - hisC JDDGAC_28620 0.16 -3.1 5,494,214 + hisC JDDGAC_28620 0.48 -0.7 5,494,214 + hisC JDDGAC_28620 0.48 -2.0 5,494,214 + hisC JDDGAC_28620 0.48 -2.0 5,494,322 + hisC JDDGAC_28620 0.58 -2.2 5,494,323 - hisC JDDGAC_28620 0.58 -1.1 5,494,323 - hisC JDDGAC_28620 0.58 -2.8 5,494,363 + hisC JDDGAC_28620 0.62 -3.4 5,494,436 + hisC JDDGAC_28620 0.68 -2.2 5,494,437 - hisC JDDGAC_28620 0.69 -2.4 5,494,512 + hisC JDDGAC_28620 0.76 -2.1 5,494,555 + hisC JDDGAC_28620 0.80 -2.4 5,494,556 - hisC JDDGAC_28620 0.80 -3.9 5,494,758 + -2.2 5,494,785 - +0.6 5,494,805 + -1.7 5,494,881 + -2.2 5,494,882 - -3.3 5,494,954 + hisD JDDGAC_28625 0.14 -0.1 5,494,954 + hisD JDDGAC_28625 0.14 -2.0 5,494,955 - hisD JDDGAC_28625 0.14 -3.0 5,494,993 + hisD JDDGAC_28625 0.17 -1.1 5,495,266 - hisD JDDGAC_28625 0.38 -1.1 5,495,646 + hisD JDDGAC_28625 0.67 +0.6 5,495,646 + hisD JDDGAC_28625 0.67 -2.7 5,495,650 - hisD JDDGAC_28625 0.67 -2.9 5,495,686 + hisD JDDGAC_28625 0.70 -2.9 5,495,686 + hisD JDDGAC_28625 0.70 -1.1 5,495,687 - hisD JDDGAC_28625 0.70 -3.3 5,495,754 + hisD JDDGAC_28625 0.75 -0.8
Or see this region's nucleotide sequence