Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt napH and napC are separated by 9 nucleotides napC and ccmA are separated by 18 nucleotides ccmA and ccmB overlap by 4 nucleotides ccmB and ccmC are separated by 41 nucleotides
JDDGAC_27230: napH - quinol dehydrogenase ferredoxin subunit NapH, at 5,228,687 to 5,229,136
napH
JDDGAC_27235: napC - cytochrome c-type protein NapC, at 5,229,146 to 5,229,748
napC
JDDGAC_27240: ccmA - cytochrome c biogenesis heme-transporting ATPase CcmA, at 5,229,767 to 5,230,384
ccmA
JDDGAC_27245: ccmB - heme exporter protein CcmB, at 5,230,381 to 5,231,043
ccmB
JDDGAC_27250: ccmC - heme exporter protein CcmC, at 5,231,085 to 5,231,822
ccmC
Position (kb) 5229
5230
5231 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5228.864 kb on + strand, within napH at 5228.893 kb on + strand, within napH at 5228.961 kb on - strand, within napH at 5228.961 kb on - strand, within napH at 5228.992 kb on + strand, within napH at 5229.048 kb on - strand, within napH at 5229.109 kb on + strand at 5229.110 kb on - strand at 5229.135 kb on - strand at 5229.145 kb on + strand at 5229.319 kb on + strand, within napC at 5229.320 kb on - strand, within napC at 5229.320 kb on - strand, within napC at 5229.320 kb on - strand, within napC at 5229.356 kb on + strand, within napC at 5229.356 kb on + strand, within napC at 5229.357 kb on - strand, within napC at 5229.357 kb on - strand, within napC at 5229.374 kb on + strand, within napC at 5229.374 kb on + strand, within napC at 5229.466 kb on + strand, within napC at 5229.589 kb on + strand, within napC at 5229.608 kb on + strand, within napC at 5229.608 kb on + strand, within napC at 5229.609 kb on - strand, within napC at 5229.610 kb on + strand, within napC at 5229.610 kb on + strand, within napC at 5229.611 kb on - strand, within napC at 5229.616 kb on + strand, within napC at 5229.617 kb on - strand, within napC at 5229.786 kb on + strand at 5229.787 kb on - strand at 5229.813 kb on + strand at 5229.813 kb on + strand at 5229.813 kb on + strand at 5229.814 kb on - strand at 5229.833 kb on - strand, within ccmA at 5229.980 kb on + strand, within ccmA at 5230.058 kb on + strand, within ccmA at 5230.059 kb on - strand, within ccmA at 5230.282 kb on + strand, within ccmA at 5230.472 kb on + strand, within ccmB at 5230.473 kb on - strand, within ccmB at 5230.525 kb on - strand, within ccmB at 5230.734 kb on - strand, within ccmB at 5230.778 kb on + strand, within ccmB at 5230.794 kb on + strand, within ccmB at 5230.868 kb on + strand, within ccmB at 5230.868 kb on + strand, within ccmB at 5230.869 kb on - strand, within ccmB at 5230.932 kb on + strand, within ccmB at 5230.932 kb on + strand, within ccmB at 5230.933 kb on - strand, within ccmB at 5230.933 kb on - strand, within ccmB at 5230.954 kb on + strand, within ccmB at 5230.997 kb on + strand at 5230.997 kb on + strand at 5230.998 kb on - strand at 5231.149 kb on + strand at 5231.184 kb on - strand, within ccmC at 5231.240 kb on + strand, within ccmC at 5231.240 kb on + strand, within ccmC at 5231.252 kb on + strand, within ccmC at 5231.256 kb on + strand, within ccmC at 5231.256 kb on + strand, within ccmC at 5231.295 kb on + strand, within ccmC at 5231.295 kb on + strand, within ccmC at 5231.295 kb on + strand, within ccmC at 5231.296 kb on - strand, within ccmC
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,228,864 + napH JDDGAC_27230 0.39 -0.6 5,228,893 + napH JDDGAC_27230 0.46 +1.1 5,228,961 - napH JDDGAC_27230 0.61 +0.4 5,228,961 - napH JDDGAC_27230 0.61 +0.1 5,228,992 + napH JDDGAC_27230 0.68 -0.3 5,229,048 - napH JDDGAC_27230 0.80 +0.7 5,229,109 + -0.2 5,229,110 - -0.2 5,229,135 - -0.3 5,229,145 + -0.3 5,229,319 + napC JDDGAC_27235 0.29 +0.7 5,229,320 - napC JDDGAC_27235 0.29 -1.7 5,229,320 - napC JDDGAC_27235 0.29 -0.6 5,229,320 - napC JDDGAC_27235 0.29 +0.7 5,229,356 + napC JDDGAC_27235 0.35 +0.1 5,229,356 + napC JDDGAC_27235 0.35 +0.0 5,229,357 - napC JDDGAC_27235 0.35 -0.1 5,229,357 - napC JDDGAC_27235 0.35 +0.8 5,229,374 + napC JDDGAC_27235 0.38 -0.5 5,229,374 + napC JDDGAC_27235 0.38 +0.9 5,229,466 + napC JDDGAC_27235 0.53 +0.5 5,229,589 + napC JDDGAC_27235 0.73 -0.4 5,229,608 + napC JDDGAC_27235 0.77 -0.6 5,229,608 + napC JDDGAC_27235 0.77 -1.6 5,229,609 - napC JDDGAC_27235 0.77 -0.1 5,229,610 + napC JDDGAC_27235 0.77 -0.4 5,229,610 + napC JDDGAC_27235 0.77 -1.0 5,229,611 - napC JDDGAC_27235 0.77 -1.0 5,229,616 + napC JDDGAC_27235 0.78 +1.6 5,229,617 - napC JDDGAC_27235 0.78 -0.3 5,229,786 + -0.3 5,229,787 - -0.5 5,229,813 + +0.8 5,229,813 + +0.3 5,229,813 + +0.4 5,229,814 - +0.0 5,229,833 - ccmA JDDGAC_27240 0.11 -0.1 5,229,980 + ccmA JDDGAC_27240 0.34 -0.2 5,230,058 + ccmA JDDGAC_27240 0.47 -0.5 5,230,059 - ccmA JDDGAC_27240 0.47 -1.3 5,230,282 + ccmA JDDGAC_27240 0.83 -1.8 5,230,472 + ccmB JDDGAC_27245 0.14 -1.1 5,230,473 - ccmB JDDGAC_27245 0.14 +0.6 5,230,525 - ccmB JDDGAC_27245 0.22 +0.1 5,230,734 - ccmB JDDGAC_27245 0.53 -0.3 5,230,778 + ccmB JDDGAC_27245 0.60 +0.4 5,230,794 + ccmB JDDGAC_27245 0.62 -0.4 5,230,868 + ccmB JDDGAC_27245 0.73 -0.1 5,230,868 + ccmB JDDGAC_27245 0.73 +0.1 5,230,869 - ccmB JDDGAC_27245 0.74 +0.1 5,230,932 + ccmB JDDGAC_27245 0.83 +0.2 5,230,932 + ccmB JDDGAC_27245 0.83 +0.7 5,230,933 - ccmB JDDGAC_27245 0.83 +0.8 5,230,933 - ccmB JDDGAC_27245 0.83 -0.3 5,230,954 + ccmB JDDGAC_27245 0.86 +0.1 5,230,997 + -1.7 5,230,997 + -0.1 5,230,998 - +0.0 5,231,149 + +0.4 5,231,184 - ccmC JDDGAC_27250 0.13 +0.7 5,231,240 + ccmC JDDGAC_27250 0.21 -0.4 5,231,240 + ccmC JDDGAC_27250 0.21 +1.1 5,231,252 + ccmC JDDGAC_27250 0.23 -0.9 5,231,256 + ccmC JDDGAC_27250 0.23 +0.1 5,231,256 + ccmC JDDGAC_27250 0.23 +0.8 5,231,295 + ccmC JDDGAC_27250 0.28 -0.2 5,231,295 + ccmC JDDGAC_27250 0.28 -0.8 5,231,295 + ccmC JDDGAC_27250 0.28 +1.9 5,231,296 - ccmC JDDGAC_27250 0.29 -2.6
Or see this region's nucleotide sequence