Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt prmB and aroC are separated by 34 nucleotides aroC and mepA are separated by 3 nucleotides mepA and yfcA overlap by 1 nucleotides
JDDGAC_26570: prmB - 50S ribosomal protein L3 N(5)-glutamine methyltransferase, at 5,087,377 to 5,088,309
prmB
JDDGAC_26575: aroC - chorismate synthase, at 5,088,344 to 5,089,429
aroC
JDDGAC_26580: mepA - penicillin-insensitive murein endopeptidase, at 5,089,433 to 5,090,257
mepA
JDDGAC_26585: yfcA - putative membrane transporter protein YfcA, at 5,090,257 to 5,091,066
yfcA
Position (kb) 5088
5089
5090 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5087.374 kb on + strand at 5087.470 kb on - strand at 5087.470 kb on - strand at 5087.513 kb on + strand, within prmB at 5087.646 kb on - strand, within prmB at 5087.650 kb on + strand, within prmB at 5087.650 kb on + strand, within prmB at 5087.781 kb on + strand, within prmB at 5087.782 kb on - strand, within prmB at 5087.786 kb on + strand, within prmB at 5087.787 kb on - strand, within prmB at 5087.790 kb on + strand, within prmB at 5087.790 kb on + strand, within prmB at 5087.796 kb on + strand, within prmB at 5087.830 kb on + strand, within prmB at 5087.861 kb on + strand, within prmB at 5087.861 kb on + strand, within prmB at 5087.862 kb on - strand, within prmB at 5087.862 kb on - strand, within prmB at 5087.865 kb on + strand, within prmB at 5087.865 kb on + strand, within prmB at 5087.866 kb on - strand, within prmB at 5087.978 kb on - strand, within prmB at 5088.004 kb on + strand, within prmB at 5088.193 kb on + strand, within prmB at 5088.249 kb on + strand at 5088.300 kb on + strand at 5088.307 kb on + strand at 5088.508 kb on + strand, within aroC at 5088.568 kb on + strand, within aroC at 5088.568 kb on + strand, within aroC at 5088.675 kb on - strand, within aroC at 5088.909 kb on + strand, within aroC at 5088.909 kb on + strand, within aroC at 5088.910 kb on - strand, within aroC at 5089.234 kb on + strand, within aroC at 5089.414 kb on + strand at 5089.414 kb on + strand at 5089.415 kb on - strand at 5089.415 kb on - strand at 5089.564 kb on + strand, within mepA at 5089.635 kb on - strand, within mepA at 5089.679 kb on - strand, within mepA at 5089.705 kb on + strand, within mepA at 5089.860 kb on + strand, within mepA at 5090.059 kb on + strand, within mepA at 5090.059 kb on + strand, within mepA at 5090.067 kb on + strand, within mepA at 5090.067 kb on + strand, within mepA at 5090.068 kb on - strand, within mepA at 5090.068 kb on - strand, within mepA at 5090.073 kb on + strand, within mepA at 5090.074 kb on - strand, within mepA at 5090.269 kb on - strand at 5090.271 kb on + strand at 5090.281 kb on - strand at 5090.367 kb on - strand, within yfcA at 5090.427 kb on + strand, within yfcA at 5090.427 kb on + strand, within yfcA
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,087,374 + -1.0 5,087,470 - +0.7 5,087,470 - -0.7 5,087,513 + prmB JDDGAC_26570 0.15 -0.0 5,087,646 - prmB JDDGAC_26570 0.29 +0.4 5,087,650 + prmB JDDGAC_26570 0.29 +0.2 5,087,650 + prmB JDDGAC_26570 0.29 -0.5 5,087,781 + prmB JDDGAC_26570 0.43 -0.6 5,087,782 - prmB JDDGAC_26570 0.43 -0.2 5,087,786 + prmB JDDGAC_26570 0.44 +0.3 5,087,787 - prmB JDDGAC_26570 0.44 +0.2 5,087,790 + prmB JDDGAC_26570 0.44 -0.5 5,087,790 + prmB JDDGAC_26570 0.44 -0.0 5,087,796 + prmB JDDGAC_26570 0.45 +0.5 5,087,830 + prmB JDDGAC_26570 0.49 -0.5 5,087,861 + prmB JDDGAC_26570 0.52 +0.9 5,087,861 + prmB JDDGAC_26570 0.52 +0.2 5,087,862 - prmB JDDGAC_26570 0.52 -0.6 5,087,862 - prmB JDDGAC_26570 0.52 -0.3 5,087,865 + prmB JDDGAC_26570 0.52 +0.2 5,087,865 + prmB JDDGAC_26570 0.52 +1.1 5,087,866 - prmB JDDGAC_26570 0.52 -0.3 5,087,978 - prmB JDDGAC_26570 0.64 -0.2 5,088,004 + prmB JDDGAC_26570 0.67 +0.4 5,088,193 + prmB JDDGAC_26570 0.87 -0.0 5,088,249 + +0.1 5,088,300 + +0.5 5,088,307 + -2.1 5,088,508 + aroC JDDGAC_26575 0.15 -2.9 5,088,568 + aroC JDDGAC_26575 0.21 -0.2 5,088,568 + aroC JDDGAC_26575 0.21 -1.5 5,088,675 - aroC JDDGAC_26575 0.30 -4.9 5,088,909 + aroC JDDGAC_26575 0.52 -2.9 5,088,909 + aroC JDDGAC_26575 0.52 -2.9 5,088,910 - aroC JDDGAC_26575 0.52 -4.7 5,089,234 + aroC JDDGAC_26575 0.82 -2.9 5,089,414 + -2.8 5,089,414 + +0.6 5,089,415 - -0.5 5,089,415 - -0.2 5,089,564 + mepA JDDGAC_26580 0.16 -0.0 5,089,635 - mepA JDDGAC_26580 0.24 -0.2 5,089,679 - mepA JDDGAC_26580 0.30 -0.8 5,089,705 + mepA JDDGAC_26580 0.33 +0.0 5,089,860 + mepA JDDGAC_26580 0.52 -0.2 5,090,059 + mepA JDDGAC_26580 0.76 +2.2 5,090,059 + mepA JDDGAC_26580 0.76 +1.0 5,090,067 + mepA JDDGAC_26580 0.77 +0.4 5,090,067 + mepA JDDGAC_26580 0.77 -0.2 5,090,068 - mepA JDDGAC_26580 0.77 -0.4 5,090,068 - mepA JDDGAC_26580 0.77 +1.2 5,090,073 + mepA JDDGAC_26580 0.78 -1.3 5,090,074 - mepA JDDGAC_26580 0.78 +0.5 5,090,269 - +0.5 5,090,271 + +0.4 5,090,281 - +0.1 5,090,367 - yfcA JDDGAC_26585 0.14 -2.1 5,090,427 + yfcA JDDGAC_26585 0.21 -0.9 5,090,427 + yfcA JDDGAC_26585 0.21 -1.0
Or see this region's nucleotide sequence