Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt intS and Arg_trna are separated by 161 nucleotides Arg_trna and yfdC are separated by 75 nucleotides
JDDGAC_26480: intS - prophage integrase IntS, at 5,067,879 to 5,069,036
intS
JDDGAC_26485: Arg_trna - tRNA-Arg(cct), at 5,069,198 to 5,069,272
_trna
JDDGAC_26490: yfdC - Inner membrane protein YfdC, at 5,069,348 to 5,070,280
yfdC
Position (kb) 5069
5070 Strain fitness (log2 ratio) -2
-1
0
1 at 5068.281 kb on - strand, within intS at 5068.338 kb on + strand, within intS at 5068.348 kb on + strand, within intS at 5068.378 kb on - strand, within intS at 5068.378 kb on - strand, within intS at 5068.382 kb on + strand, within intS at 5068.463 kb on - strand, within intS at 5068.501 kb on + strand, within intS at 5068.523 kb on + strand, within intS at 5068.658 kb on + strand, within intS at 5068.662 kb on + strand, within intS at 5068.663 kb on - strand, within intS at 5068.663 kb on - strand, within intS at 5068.663 kb on - strand, within intS at 5068.727 kb on + strand, within intS at 5068.954 kb on + strand at 5068.955 kb on - strand at 5068.955 kb on - strand at 5068.960 kb on + strand at 5068.970 kb on + strand at 5069.251 kb on - strand, within Arg_trna at 5069.251 kb on - strand, within Arg_trna at 5069.251 kb on - strand, within Arg_trna at 5069.261 kb on - strand, within Arg_trna at 5069.265 kb on - strand at 5069.287 kb on - strand at 5069.287 kb on - strand at 5069.310 kb on + strand at 5069.314 kb on + strand at 5069.315 kb on - strand at 5069.498 kb on + strand, within yfdC at 5069.504 kb on - strand, within yfdC at 5069.504 kb on - strand, within yfdC at 5069.508 kb on - strand, within yfdC at 5069.562 kb on + strand, within yfdC at 5069.630 kb on + strand, within yfdC at 5069.632 kb on + strand, within yfdC at 5069.632 kb on + strand, within yfdC at 5069.632 kb on + strand, within yfdC at 5069.632 kb on + strand, within yfdC at 5069.633 kb on - strand, within yfdC at 5069.675 kb on + strand, within yfdC at 5069.680 kb on + strand, within yfdC at 5069.681 kb on - strand, within yfdC at 5069.801 kb on - strand, within yfdC at 5069.802 kb on + strand, within yfdC at 5069.803 kb on - strand, within yfdC at 5069.839 kb on + strand, within yfdC at 5069.840 kb on - strand, within yfdC at 5069.840 kb on - strand, within yfdC at 5069.877 kb on - strand, within yfdC at 5069.877 kb on - strand, within yfdC at 5069.877 kb on - strand, within yfdC at 5069.877 kb on - strand, within yfdC at 5069.877 kb on - strand, within yfdC at 5069.915 kb on + strand, within yfdC at 5069.916 kb on - strand, within yfdC at 5069.986 kb on + strand, within yfdC at 5069.989 kb on - strand, within yfdC at 5070.044 kb on + strand, within yfdC at 5070.152 kb on - strand, within yfdC at 5070.197 kb on + strand at 5070.197 kb on + strand at 5070.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,068,281 - intS JDDGAC_26480 0.35 -0.7 5,068,338 + intS JDDGAC_26480 0.40 -0.5 5,068,348 + intS JDDGAC_26480 0.41 -0.0 5,068,378 - intS JDDGAC_26480 0.43 -0.5 5,068,378 - intS JDDGAC_26480 0.43 +0.3 5,068,382 + intS JDDGAC_26480 0.43 +0.7 5,068,463 - intS JDDGAC_26480 0.50 -0.6 5,068,501 + intS JDDGAC_26480 0.54 -0.0 5,068,523 + intS JDDGAC_26480 0.56 -0.7 5,068,658 + intS JDDGAC_26480 0.67 +1.3 5,068,662 + intS JDDGAC_26480 0.68 -0.3 5,068,663 - intS JDDGAC_26480 0.68 -0.2 5,068,663 - intS JDDGAC_26480 0.68 +1.3 5,068,663 - intS JDDGAC_26480 0.68 -0.6 5,068,727 + intS JDDGAC_26480 0.73 -0.6 5,068,954 + -1.2 5,068,955 - +1.2 5,068,955 - +0.4 5,068,960 + +0.3 5,068,970 + +0.7 5,069,251 - Arg_trna JDDGAC_26485 0.71 +0.8 5,069,251 - Arg_trna JDDGAC_26485 0.71 -0.3 5,069,251 - Arg_trna JDDGAC_26485 0.71 -1.4 5,069,261 - Arg_trna JDDGAC_26485 0.84 -1.4 5,069,265 - -0.4 5,069,287 - +0.6 5,069,287 - -1.8 5,069,310 + -1.0 5,069,314 + -0.4 5,069,315 - -0.4 5,069,498 + yfdC JDDGAC_26490 0.16 +0.5 5,069,504 - yfdC JDDGAC_26490 0.17 -0.9 5,069,504 - yfdC JDDGAC_26490 0.17 +0.0 5,069,508 - yfdC JDDGAC_26490 0.17 +0.9 5,069,562 + yfdC JDDGAC_26490 0.23 -1.8 5,069,630 + yfdC JDDGAC_26490 0.30 +0.3 5,069,632 + yfdC JDDGAC_26490 0.30 +0.6 5,069,632 + yfdC JDDGAC_26490 0.30 +0.8 5,069,632 + yfdC JDDGAC_26490 0.30 -0.3 5,069,632 + yfdC JDDGAC_26490 0.30 +1.3 5,069,633 - yfdC JDDGAC_26490 0.31 +0.2 5,069,675 + yfdC JDDGAC_26490 0.35 -0.1 5,069,680 + yfdC JDDGAC_26490 0.36 +0.6 5,069,681 - yfdC JDDGAC_26490 0.36 +0.6 5,069,801 - yfdC JDDGAC_26490 0.49 -0.2 5,069,802 + yfdC JDDGAC_26490 0.49 +0.6 5,069,803 - yfdC JDDGAC_26490 0.49 -0.3 5,069,839 + yfdC JDDGAC_26490 0.53 -0.4 5,069,840 - yfdC JDDGAC_26490 0.53 +0.7 5,069,840 - yfdC JDDGAC_26490 0.53 -1.0 5,069,877 - yfdC JDDGAC_26490 0.57 +0.3 5,069,877 - yfdC JDDGAC_26490 0.57 -0.4 5,069,877 - yfdC JDDGAC_26490 0.57 +0.8 5,069,877 - yfdC JDDGAC_26490 0.57 -0.2 5,069,877 - yfdC JDDGAC_26490 0.57 +0.7 5,069,915 + yfdC JDDGAC_26490 0.61 +0.0 5,069,916 - yfdC JDDGAC_26490 0.61 -0.4 5,069,986 + yfdC JDDGAC_26490 0.68 +0.3 5,069,989 - yfdC JDDGAC_26490 0.69 +0.2 5,070,044 + yfdC JDDGAC_26490 0.75 +0.5 5,070,152 - yfdC JDDGAC_26490 0.86 -0.2 5,070,197 + -1.0 5,070,197 + -1.0 5,070,198 - +0.2
Or see this region's nucleotide sequence