Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zipA and ligA are separated by 70 nucleotides ligA and ypeB are separated by 1 nucleotides ypeB and yfeH overlap by 4 nucleotides
JDDGAC_26160: zipA - cell division protein ZipA, at 5,004,223 to 5,005,221
zipA
JDDGAC_26165: ligA - NAD-dependent DNA ligase LigA, at 5,005,292 to 5,007,307
ligA
JDDGAC_26170: ypeB - Uncharacterized protein YpeB, at 5,007,309 to 5,007,527
ypeB
JDDGAC_26175: yfeH - Putative symporter YfeH, at 5,007,524 to 5,008,522
yfeH
Position (kb) 5005
5006
5007
5008 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5005.222 kb on + strand at 5005.222 kb on + strand at 5005.228 kb on + strand at 5005.228 kb on + strand at 5007.334 kb on + strand, within ypeB at 5007.334 kb on + strand, within ypeB at 5007.341 kb on + strand, within ypeB at 5007.363 kb on + strand, within ypeB at 5007.363 kb on + strand, within ypeB at 5007.363 kb on + strand, within ypeB at 5007.399 kb on + strand, within ypeB at 5007.399 kb on + strand, within ypeB at 5007.400 kb on - strand, within ypeB at 5007.454 kb on + strand, within ypeB at 5007.455 kb on - strand, within ypeB at 5007.476 kb on + strand, within ypeB at 5007.561 kb on - strand at 5007.583 kb on - strand at 5007.733 kb on + strand, within yfeH at 5007.785 kb on - strand, within yfeH at 5007.789 kb on - strand, within yfeH at 5007.865 kb on + strand, within yfeH at 5007.866 kb on - strand, within yfeH at 5007.896 kb on - strand, within yfeH at 5007.897 kb on + strand, within yfeH at 5007.898 kb on - strand, within yfeH at 5008.021 kb on + strand, within yfeH at 5008.022 kb on - strand, within yfeH at 5008.212 kb on + strand, within yfeH at 5008.227 kb on + strand, within yfeH at 5008.271 kb on + strand, within yfeH at 5008.272 kb on - strand, within yfeH
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 5,005,222 + +0.2 5,005,222 + -3.3 5,005,228 + +0.1 5,005,228 + +0.3 5,007,334 + ypeB JDDGAC_26170 0.11 +0.9 5,007,334 + ypeB JDDGAC_26170 0.11 -1.1 5,007,341 + ypeB JDDGAC_26170 0.15 -1.6 5,007,363 + ypeB JDDGAC_26170 0.25 +0.5 5,007,363 + ypeB JDDGAC_26170 0.25 -0.8 5,007,363 + ypeB JDDGAC_26170 0.25 +0.1 5,007,399 + ypeB JDDGAC_26170 0.41 +0.2 5,007,399 + ypeB JDDGAC_26170 0.41 -0.3 5,007,400 - ypeB JDDGAC_26170 0.42 +0.3 5,007,454 + ypeB JDDGAC_26170 0.66 +1.1 5,007,455 - ypeB JDDGAC_26170 0.67 -1.8 5,007,476 + ypeB JDDGAC_26170 0.76 -0.2 5,007,561 - +0.5 5,007,583 - -0.4 5,007,733 + yfeH JDDGAC_26175 0.21 +3.0 5,007,785 - yfeH JDDGAC_26175 0.26 -0.5 5,007,789 - yfeH JDDGAC_26175 0.27 +1.3 5,007,865 + yfeH JDDGAC_26175 0.34 +1.3 5,007,866 - yfeH JDDGAC_26175 0.34 +0.8 5,007,896 - yfeH JDDGAC_26175 0.37 +0.8 5,007,897 + yfeH JDDGAC_26175 0.37 -1.4 5,007,898 - yfeH JDDGAC_26175 0.37 -0.3 5,008,021 + yfeH JDDGAC_26175 0.50 +0.3 5,008,022 - yfeH JDDGAC_26175 0.50 -0.4 5,008,212 + yfeH JDDGAC_26175 0.69 +0.8 5,008,227 + yfeH JDDGAC_26175 0.70 +2.0 5,008,271 + yfeH JDDGAC_26175 0.75 -0.4 5,008,272 - yfeH JDDGAC_26175 0.75 +1.3
Or see this region's nucleotide sequence