Experiment: Control_ECRC98_WM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt JDDGAC_25590 and JDDGAC_25595 overlap by 4 nucleotides JDDGAC_25595 and JDDGAC_25600 are separated by 2 nucleotides JDDGAC_25600 and JDDGAC_25605 are separated by 14 nucleotides
JDDGAC_25590: JDDGAC_25590 - Head to tail connecting protein, at 4,889,575 to 4,891,254
_25590
JDDGAC_25595: JDDGAC_25595 - Phage protein, at 4,891,251 to 4,891,547
_25595
JDDGAC_25600: JDDGAC_25600 - peptidase, at 4,891,550 to 4,892,245
_25600
JDDGAC_25605: JDDGAC_25605 - Bbp17, at 4,892,260 to 4,893,246
_25605
Position (kb) 4891
4892 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4890.281 kb on - strand, within JDDGAC_25590 at 4890.283 kb on + strand, within JDDGAC_25590 at 4890.345 kb on + strand, within JDDGAC_25590 at 4890.423 kb on + strand, within JDDGAC_25590 at 4890.469 kb on - strand, within JDDGAC_25590 at 4890.547 kb on + strand, within JDDGAC_25590 at 4890.547 kb on + strand, within JDDGAC_25590 at 4890.547 kb on + strand, within JDDGAC_25590 at 4890.547 kb on + strand, within JDDGAC_25590 at 4890.548 kb on - strand, within JDDGAC_25590 at 4890.548 kb on - strand, within JDDGAC_25590 at 4890.548 kb on - strand, within JDDGAC_25590 at 4890.589 kb on + strand, within JDDGAC_25590 at 4890.590 kb on - strand, within JDDGAC_25590 at 4890.590 kb on - strand, within JDDGAC_25590 at 4890.700 kb on - strand, within JDDGAC_25590 at 4890.796 kb on - strand, within JDDGAC_25590 at 4890.893 kb on - strand, within JDDGAC_25590 at 4890.948 kb on + strand, within JDDGAC_25590 at 4890.948 kb on + strand, within JDDGAC_25590 at 4891.038 kb on + strand, within JDDGAC_25590 at 4891.038 kb on + strand, within JDDGAC_25590 at 4891.039 kb on - strand, within JDDGAC_25590 at 4891.039 kb on - strand, within JDDGAC_25590 at 4891.039 kb on - strand, within JDDGAC_25590 at 4891.227 kb on + strand at 4891.261 kb on - strand at 4891.442 kb on + strand, within JDDGAC_25595 at 4891.442 kb on + strand, within JDDGAC_25595 at 4891.443 kb on - strand, within JDDGAC_25595 at 4891.443 kb on - strand, within JDDGAC_25595 at 4891.558 kb on - strand at 4891.614 kb on + strand at 4891.614 kb on + strand at 4891.615 kb on - strand at 4891.615 kb on - strand at 4891.615 kb on - strand at 4891.615 kb on - strand at 4891.696 kb on + strand, within JDDGAC_25600 at 4891.697 kb on - strand, within JDDGAC_25600 at 4891.884 kb on + strand, within JDDGAC_25600 at 4891.884 kb on + strand, within JDDGAC_25600 at 4891.884 kb on + strand, within JDDGAC_25600 at 4891.925 kb on + strand, within JDDGAC_25600 at 4892.051 kb on - strand, within JDDGAC_25600 at 4892.126 kb on - strand, within JDDGAC_25600 at 4892.215 kb on + strand at 4892.234 kb on + strand at 4892.243 kb on + strand at 4892.276 kb on + strand at 4892.362 kb on - strand, within JDDGAC_25605 at 4892.379 kb on + strand, within JDDGAC_25605 at 4892.438 kb on + strand, within JDDGAC_25605 at 4892.448 kb on + strand, within JDDGAC_25605 at 4892.449 kb on - strand, within JDDGAC_25605 at 4892.467 kb on + strand, within JDDGAC_25605 at 4892.468 kb on - strand, within JDDGAC_25605 at 4892.468 kb on - strand, within JDDGAC_25605 at 4892.468 kb on - strand, within JDDGAC_25605 at 4892.533 kb on + strand, within JDDGAC_25605 at 4892.534 kb on - strand, within JDDGAC_25605 at 4892.534 kb on - strand, within JDDGAC_25605
Per-strain Table
Position Strand Gene LocusTag Fraction Control_ECRC98_WM remove 4,890,281 - JDDGAC_25590 0.42 -1.9 4,890,283 + JDDGAC_25590 0.42 +0.0 4,890,345 + JDDGAC_25590 0.46 +0.5 4,890,423 + JDDGAC_25590 0.50 +0.1 4,890,469 - JDDGAC_25590 0.53 -0.2 4,890,547 + JDDGAC_25590 0.58 -1.1 4,890,547 + JDDGAC_25590 0.58 -3.7 4,890,547 + JDDGAC_25590 0.58 -1.7 4,890,547 + JDDGAC_25590 0.58 -0.9 4,890,548 - JDDGAC_25590 0.58 -1.4 4,890,548 - JDDGAC_25590 0.58 +1.8 4,890,548 - JDDGAC_25590 0.58 -2.4 4,890,589 + JDDGAC_25590 0.60 +0.5 4,890,590 - JDDGAC_25590 0.60 +0.3 4,890,590 - JDDGAC_25590 0.60 -1.6 4,890,700 - JDDGAC_25590 0.67 -1.4 4,890,796 - JDDGAC_25590 0.73 +0.5 4,890,893 - JDDGAC_25590 0.78 -1.1 4,890,948 + JDDGAC_25590 0.82 -0.4 4,890,948 + JDDGAC_25590 0.82 -2.9 4,891,038 + JDDGAC_25590 0.87 +0.0 4,891,038 + JDDGAC_25590 0.87 -1.8 4,891,039 - JDDGAC_25590 0.87 +2.5 4,891,039 - JDDGAC_25590 0.87 +0.5 4,891,039 - JDDGAC_25590 0.87 -0.3 4,891,227 + -2.0 4,891,261 - -0.7 4,891,442 + JDDGAC_25595 0.64 -0.3 4,891,442 + JDDGAC_25595 0.64 -0.8 4,891,443 - JDDGAC_25595 0.65 -0.5 4,891,443 - JDDGAC_25595 0.65 -1.4 4,891,558 - -0.1 4,891,614 + +0.6 4,891,614 + -0.9 4,891,615 - -1.5 4,891,615 - -0.9 4,891,615 - -0.8 4,891,615 - +0.9 4,891,696 + JDDGAC_25600 0.21 +0.3 4,891,697 - JDDGAC_25600 0.21 +0.3 4,891,884 + JDDGAC_25600 0.48 -0.1 4,891,884 + JDDGAC_25600 0.48 -2.1 4,891,884 + JDDGAC_25600 0.48 -0.8 4,891,925 + JDDGAC_25600 0.54 -0.0 4,892,051 - JDDGAC_25600 0.72 -0.9 4,892,126 - JDDGAC_25600 0.83 -0.2 4,892,215 + -0.2 4,892,234 + -0.7 4,892,243 + -0.8 4,892,276 + -0.9 4,892,362 - JDDGAC_25605 0.10 +0.4 4,892,379 + JDDGAC_25605 0.12 -1.3 4,892,438 + JDDGAC_25605 0.18 -0.6 4,892,448 + JDDGAC_25605 0.19 +0.6 4,892,449 - JDDGAC_25605 0.19 +1.9 4,892,467 + JDDGAC_25605 0.21 -4.3 4,892,468 - JDDGAC_25605 0.21 -0.4 4,892,468 - JDDGAC_25605 0.21 +0.5 4,892,468 - JDDGAC_25605 0.21 -0.8 4,892,533 + JDDGAC_25605 0.28 +2.1 4,892,534 - JDDGAC_25605 0.28 +0.7 4,892,534 - JDDGAC_25605 0.28 +1.2
Or see this region's nucleotide sequence